ArticleGenome biology2009
Fast genomic muChIP-chip from 1,000 cells.
Article in Genome biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
19 citing papers in PubMed, 36 citations in OpenAlex.
- Pinpointing the Genomic Localizations of Chromatin-Associated Proteins: The Yesterday, Today, and Tomorrow of ChIP-seq.Current protocols in cell biology · 2019Article
- Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance.BMC biology · 2018Article
- A comparative study of ChIP-seq sequencing library preparation methods.BMC genomics · 2016Article
- Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape.Genome biology · 2015Article
- Prmt5 is a regulator of muscle stem cell expansion in adult mice.Nature communications · 2015Article
- Assaying the epigenome in limited numbers of cells.Methods (San Diego, Calif.) · 2015Review
- Screening of potential diagnostic markers and therapeutic targets against colorectal cancer.OncoTargets and therapy · 2015Article
- Histone modifications and mRNA expression in the inner cell mass and trophectoderm of bovine blastocysts.Epigenetics · 2013Article
- Limitations and possibilities of low cell number ChIP-seq.BMC genomics · 2012Article
- Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes.Nucleic acids research · 2012Article
- Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue.Nature protocols · 2011Article
- A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.Nucleic acids research · 2011Article
- Tiling histone H3 lysine 4 and 27 methylation in zebrafish using high-density microarrays.PloS one · 2010Article
- Pathology tissue-chromatin immunoprecipitation, coupled with high-throughput sequencing, allows the epigenetic profiling of patient samples.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Promoter DNA methylation patterns of differentiated cells are largely programmed at the progenitor stage.Molecular biology of the cell · 2010Article
- Chromatin environment of histone variant H3.3 revealed by quantitative imaging and genome-scale chromatin and DNA immunoprecipitation.Molecular biology of the cell · 2010Article
- A Method to Study the Epigenetic Chromatin States of Rare Hematopoietic Stem and Progenitor Cells; MiniChIP-Chip.Biological procedures online · 2010Article
- The current state of chromatin immunoprecipitation.Molecular biotechnology · 2010Review
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genome-wide location analysis of histone modifications and transcription factor binding relies on chromatin immunoprecipitation (ChIP) assays. These assays are, however, time-consuming and require large numbers of cells, hindering their application to the analysis of many interesting cell types. We report here a fast microChIP (muChIP) assay for 1,000 cells in combination with microarrays to produce genome-scale surveys of histone modifications. muChIP-chip reliably reproduces data obtained by large-scale assays: H3K9ac and H3K9m3 enrichment profiles are conserved and nucleosome-free regions are revealed.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.