ArticleThe New phytologist2009
Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study.
Article in The New phytologist, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed.
- Genome association of carbohydrate metabolites provides new insights toward functional breeding in coffee.The plant genome · 2026Article
- Flowering and Fruiting ofPlants (Basel, Switzerland) · 2025Review
- Genome-wide characterization of invertases in Arabica coffee and its progenitors reveals putative genes involved in fruit development.Functional & integrative genomics · 2025Article
- Identification of a promoter region specifically active in the maturing endosperm of Arabidopsis seeds and its use for targeted modification of fatty acid metabolism.The Plant journal : for cell and molecular biology · 2025Article
- Review
- Identification of the first plant caffeoyl-quinate esterases inFrontiers in plant science · 2025Article
- Transcriptomic reveals key genes and regulatory pathways in galactomannan biosynthesis inFrontiers in plant science · 2025Article
- Combined sensory, volatilome and transcriptome analyses identify a limonene terpene synthase as a major contributor to the characteristic aroma of a Coffea arabica L. specialty coffee.BMC plant biology · 2024Article
- Comparative transcriptome analysis in peaberry and regular bean coffee to identify bean quality associated genes.BMC genomic data · 2023Article
- New cup out of old coffee: contribution of parental gene expression legacy to phenotypic novelty in coffee beans of the allopolyploid Coffea arabica L.Annals of botany · 2023Article
- Ecological quality as a coffee quality enhancer. A review.Agronomy for sustainable development · 2023Review
- Genome-wide association mapping of seed oligosaccharides in chickpea.Frontiers in plant science · 2022Article
- Molecular Control of Oil Metabolism in the Endosperm of Seeds.International journal of molecular sciences · 2021Review
- Roles of metabolic regulation in developing Quercus variabilis acorns at contrasting geologically-derived phosphorus sites in subtropical China.BMC plant biology · 2020Article
- Article
- Slower development of lower canopy beans produces better coffee.Journal of experimental botany · 2020Article
- Unraveling dynamic metabolomes underlying different maturation stages of berries harvested fromJournal of ginseng research · 2020Article
- Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds.Journal of experimental botany · 2020Article
- An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses.Functional & integrative genomics · 2019Article
- Identification of a seed maturation protein gene from Coffea arabica (CaSMP) and analysis of its promoter activity in tomato.Plant cell reports · 2018Article
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8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
* The genomic era facilitates the understanding of how transcriptional networks are interconnected to program seed development and filling. However, to date, little information is available regarding dicot seeds with a transient perisperm and a persistent, copious endosperm. Coffea arabica is the subject of increasing genomic research and is a model for nonorthodox albuminous dicot seeds of tropical origin. * The aim of this study was to reconstruct the metabolic pathways involved in the biosynthesis of the main coffee seed storage compounds, namely cell wall polysaccharides, triacylglycerols, sucrose, and chlorogenic acids. For this purpose, we integrated transcriptomic and metabolite analyses, combining real-time RT-PCR performed on 137 selected genes (of which 79 were uncharacterized in Coffea) and metabolite profiling. * Our map-drawing approach derived from model plants enabled us to propose a rationale for the peculiar traits of the coffee endosperm, such as its unusual fatty acid composition, remarkable accumulation of chlorogenic acid and cell wall polysaccharides. * Comparison with the developmental features of exalbuminous seeds described in the literature revealed that the two seed types share important regulatory mechanisms for reserve biosynthesis, independent of the origin and ploidy level of the storage tissue.
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