Evidence map›Paper›PMID 19205800›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2009

Analysis of the rat Iddm14 diabetes susceptibility locus in multiple rat strains: identification of a susceptibility haplotype in the Tcrb-V locus.

John P Mordes, Laura Cort, Elaine Norowski, Jean Leif, Jessica M Fuller, Ake Lernmark, Dale L Greiner, Elizabeth P Blankenhorn

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Deletion of Vβ3Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. From Immunity and Vaccines to Mammalian Regeneration.The Journal of infectious diseases · 2015
    Article
  8. Article
  9. Article
  10. Targeting the trimolecular complex.Clinical immunology (Orlando, Fla.) · 2013
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Juvenile diabetes.The Indian journal of medical research · 2012
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

John P MordesDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, 01655, USA.
Laura Cort
Elaine Norowski
Jean Leif
Jessica M Fuller
Ake Lernmark
Dale L Greiner
Elizabeth P Blankenhorn
University of Massachusetts Chan Medical School · USDrexel University · USLund University · SEMalmö University · SE

Funding

PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
EXPERIMENTAL JUVENILE TYPE DIABETESR01DK025306 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREINER, DALE LESLIE · 1994 to 2008
$3.8M
GENETICS OF AUTOIMMUNITY IN BB RATSR01DK049106 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREINER, DALE LESLIE · 1995 to 2006
$2.3M
PROTHYMOCYTES AND DIABETES MELLITUS IN BB/W RATSR01DK036024 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREINER, DALE LESLIE · 1986 to 2003
$856k
Autoimmunity-associated genes in new rat models: validation of human GWAS genesR21AI088480 · NIAID · DREXEL UNIVERSITY · PI BLANKENHORN, ELIZABETH P · 2010 to 2011
$444k
SUPERANTIGENS, MAST CELLS AND T CELLS IN ATOPIC DISEASER03AI042386 · NIAID · OHIO STATE UNIVERSITY · PI FOX, CHARITY C · 1997 to 1998
–
EXPERIMENTAL JUVENILE-TYPE DIABETESR37DK025306 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ROSSINI, ALDO A · 1986 to 1993
–
NIAID NIH HHS AI42386NIAID NIH HHS R21 AI088480NIDDK NIH HHS DK25306NIDDK NIH HHS DK32520NIDDK NIH HHS DK36024NIDDK NIH HHS DK49106NIDDK NIH HHS P30 DK032520NIDDK NIH HHS R01 DK025306NIDDK NIH HHS R01 DK036024NIDDK NIH HHS R01 DK049106
6 · The paper itself

Abstract

Iddm14 (formerly Iddm4) is a non-MHC-linked genetic locus associated with autoimmune diabetes. Its effects have been well-documented in BB-derived rats in which diabetes is either induced by immunologic perturbation or occurs spontaneously. The role of Iddm14 in non-BB rat strains is unknown. Our goal was to extend the analysis of Iddm14 in new diabetes-susceptible strains and to identify candidate genes in the rat Iddm14 diabetes susceptibility locus that are common to these multiple diabetic strains. To determine if Iddm14 is important in strains other than BB, we first genotyped a (LEW.1WR1 x WF)F2 cohort in which diabetes was induced by perturbation with polyinosinic:polycytidylic acid. We found that Iddm14 is a major determinant of diabetes susceptibility in LEW.1WR1 rats. We then used nucleotide sequencing to establish a strain distribution pattern of polymorphisms (insertions, deletions, and single nucleotide polymorphisms [SNPs]) that predicts susceptibility to diabetes in a panel of inbred and congenic rats. Using the positional information from the congenic strains and the new linkage data, we identified a susceptibility haplotype in the T-cell receptor Vbeta chain (Tcrb-V) locus. This haplotype includes Tcrb-V13, which is identical in five susceptible strains but different in resistant WF and F344 rats. We conclude that Iddm14 is a powerful determinant of both spontaneous and induced autoimmune diabetes in multiple rat strains, and that Tcrb-V13 SNPs constitute a haplotype of gene elements that may be critical for autoimmune diabetes in rats.

Indexed as

Genetic Predisposition to DiseaseAnimalsDiabetes Mellitus, Type 1FemaleHaplotypesHumansMalePolymorphism, Single NucleotideRatsRats, Inbred StrainsReceptors, Antigen, T-Cell, alpha-betaReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID19205800
PMCPMC3962255
OpenAlexW2001858202

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.