Evidence map›Paper›PMID 19200445›Full record

ArticleVirus research2009

The simian varicella virus uracil DNA glycosylase and dUTPase genes are expressed in vivo, but are non-essential for replication in cell culture.

Toby M Ward, Marshall V Williams, Vicki Traina-Dorge, Wayne L Gray

Abstract read
In one paragraph

Article in Virus research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Simian varicella virus: molecular virology.Current topics in microbiology and immunology · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Toby M WardDepartment of Microbiology and Immunology, 4301 West Markham Street, University of Arkansas for Medical Sciences, Slot 511, Little Rock, AR 72205, United States.
Marshall V Williams
Vicki Traina-Dorge
Wayne L Gray
University of Arkansas for Medical Sciences · USThe Ohio State University Wexner Medical Center · USTulane University · US

Funding

ZCM:A NOVEL BROAD-SPECTRUM MICROBICIDE FOR SEXUALLY TRANSMITTED INFECTIONSP51RR000164 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI VEAZEY, RONALD S. · 1985 to 2011
$100.1M
ZENARESTAT IN DIABETIC NEUROPATHYM01RR005096 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI FONSECA, VIVIAN A · 1990 to 2006
$17.4M
Animal models to design &evaluate improved VZV vaccinesR01AI052373 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI GRAY, WAYNE L · 2003 to 2007
$1.5M
EXPANSION OF BSL2 CAGING FOR INFECTIOUS DISEASE RESEARCHG20RR019628 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI BOHM, RUDOLF P · 2004 to 2004
$700k
BLDG D RENOV-ANIMAL RESOURCES IMPROVEMENTSG20RR016930 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI BLANCHARD, JAMES L · 2001 to 2001
$700k
BREEDING FACILITY AND SECURITY IMPROVEMENTG20RR018397 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI LACKNER, ANDREW A · 2003 to 2003
$697k
MINORITY HIGH SCHOOL STUDENT RESEARCH APPRENTICE PROGRAMS03RR003466 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI HYLAND, SUSAN J · 1987 to 1995
–
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012112 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI GERONE, PETER J · 1996 to 1996
–
NCRR NIH HHS 1G20RR012112NCRR NIH HHS 1G20RR015169NCRR NIH HHS 1G20RR016930NCRR NIH HHS 1G20RR018397NCRR NIH HHS 1G20RR019628NCRR NIH HHS 1G20RR03466NCRR NIH HHS 2M01RR005096NCRR NIH HHS 2P51RR000164NCRR NIH HHS G20 RR016930NCRR NIH HHS G20 RR018397NCRR NIH HHS G20 RR019628NCRR NIH HHS M01 RR005096NIAID NIH HHS AI052373NIAID NIH HHS R01 AI052373
6 · The paper itself

Abstract

Neurotropic herpesviruses express viral deoxyuridine triphosphate nucleotidohydrolase (dUTPase) and uracil DNA glycosylase (UDG) enzymes which may reduce uracil misincorporation into viral DNA, particularly in neurons of infected ganglia. The simian varicella virus (SVV) dUTPase (ORF 8) and UDG (ORF 59) share 37.7% and 53.9% amino acid identity, respectively, with varicella-zoster virus (VZV) homologs. Infectious SVV mutants defective in either dUTPase (SVV-dUTPase(-)) or UDG (SVV-UDG(-)) activity or both (SVV-dUTPase(-)/UDG(-)) were constructed using recA assisted restriction endonuclease cleavage (RARE) and a cosmid recombination system. Loss of viral dUTPase and UDG enzymatic activity was confirmed in CV-1 cells infected with the SVV mutants. The SVV-dUTPase(-), SVV-UDG(-), and SVV-dUTPase(-)/UDG(-) mutants replicated as efficiently as wild-type SVV in cell culture. SVV dUTPase and UDG expression was detected in tissues derived from acutely infected animals, but not in tissues derived from latently infected animals. Further studies will evaluate the pathogenesis of SVV dUTPase and UDG mutants and their potential as varicella vaccines.

Indexed as

Virus ReplicationAmino Acid SequenceAnimalsBase SequenceChickenpoxChlorocebus aethiopsDisease Models, AnimalGene Expression Regulation, EnzymologicHerpesviridae InfectionsHerpesvirus 3, HumanHumansMolecular Sequence DataPyrophosphatasesSequence AlignmentUracil-DNA GlycosidaseVaricellovirusdUTP pyrophosphatasePyrophosphatasesUracil-DNA GlycosidaseViral Proteins

Identifiers

PMID19200445
PMCPMC3268698
OpenAlexW1971499306

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.