Evidence map›Paper›PMID 19198588›Full record

ArticleNature structural & molecular biology2009

A complex gene regulatory mechanism that operates at the nexus of multiple RNA processing decisions.

David S McPheeters, Nicole Cremona, Sham Sunder, Huei-Mei Chen, Nicole Averbeck, Janet Leatherwood, Jo Ann Wise

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  8. Open biology · 2018
    Article
  9. Article
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  11. YTH Domain: A Family of NGenomics, proteomics & bioinformatics · 2018
    Review
  12. Article
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  14. Article
  15. Review
  16. Article
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  19. Long noncoding RNA-based chromatin control of germ cell differentiation: a yeast perspective.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David S McPheetersCenter for RNA Molecular Biology and Department of Molecular Biology & Microbiology, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, Cleveland, Ohio 44106-4960, USA.
Nicole Cremona
Sham Sunder
Huei-Mei Chen
Nicole Averbeck
Janet Leatherwood
Jo Ann Wise
Case Western Reserve University · USStony Brook University · US

Funding

MEIOSIS-SPECIFIC SPLICING IN FISSION YEASTR01GM073217 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI WISE, JO ANN · 2006 to 2009
$1.4M
SNRNP-SUBSTRATE INTERACTIONS IN S POMBE SPLICINGR01GM038070 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI WISE, JO ANN · 1987 to 2004
$1.2M
Mechanisms of 3'Splice Site Selection in S. cerevisiaeR01GM064682 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI MCPHEETERS, DAVID SCOTT · 2002 to 2005
$900k
NIGMS NIH HHS R01 GM038070NIGMS NIH HHS R01 GM064682NIGMS NIH HHS R01-GM064682NIGMS NIH HHS R01 GM073217NIGMS NIH HHS R01-GM073217NIGMS NIH HHS R01-GM38070
6 · The paper itself

Abstract

Expression of crs1 pre-mRNA, encoding a meiotic cyclin, is blocked in actively growing fission yeast cells by a multifaceted mechanism. The most striking feature is that in vegetative cells, crs1 transcripts are continuously synthesized but are targeted for degradation rather than splicing and polyadenylation. Turnover of crs1 RNA requires the exosome, as do previously described nuclear surveillance and silencing mechanisms, but does not involve a noncanonical poly(A) polymerase. Instead, crs1 transcripts are targeted for destruction by a factor previously implicated in turnover of meiotic RNAs in growing cells. Like exosome mutants, mmi1 mutants splice and polyadenylate vegetative crs1 transcripts. Two regulatory elements are located at the 3' end of the crs1 gene, consistent with the increased accumulation of spliced RNA in polyadenylation factor mutants. This highly integrated regulatory strategy may ensure a rapid response to adverse conditions, thereby guaranteeing survival.

Indexed as

Gene Expression Regulation, FungalCyclinsExosomesFungal ProteinsModels, BiologicalmRNA Cleavage and Polyadenylation FactorsPolynucleotide AdenylyltransferaseRNA, FungalRNA PrecursorsRNA SplicingRNA StabilitySchizosaccharomycesSchizosaccharomyces pombe ProteinsCyclinsFungal ProteinsMmi1 protein, S pombemRNA Cleavage and Polyadenylation FactorsPolynucleotide AdenylyltransferaseRNA, FungalRNA PrecursorsSchizosaccharomyces pombe Proteins

Identifiers

PMID19198588
PMCPMC2776722
OpenAlexW2076677349

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.