Evidence map›Paper›PMID 19197988›Full record

ArticleEnvironmental and molecular mutagenesis2009

Requirement of the Saccharomyces cerevisiae APN1 gene for the repair of mitochondrial DNA alkylation damage.

Karina Acevedo-Torres, Sharon Fonseca-Williams, Sylvette Ayala-Torres, Carlos A Torres-Ramos

Open access · greenAbstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Repair in Haploid Context.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Karina Acevedo-TorresDepartment of Physiology and Biophysics, Medical Sciences Campus, University of Puerto Rico, San Juan 00936-5067, Puerto Rico.
Sharon Fonseca-Williams
Sylvette Ayala-Torres
Carlos A Torres-Ramos
University of Puerto Rico, Medical Sciences Campus · PR

Funding

SUPPLEMENT FOR RENOVATION OF ANIMAL FACILITIES AT INSTITUTE OF NEUROBIOLOGYG12RR003051 · NCRR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI RODRIGUEZ-MEDINA, JOSE R · 1986 to 2011
$28.1M
VIRAL SEQUENCES IN PEDIATRIC HIV INFECTION IN PRG12RR003050 · NCRR · PONCE SCHOOL OF MEDICINE · PI ARMSTRONG, RAUL A · 1985 to 2011
$28.1M
UPR--MEDICAL SCIENCES CAMPUS, MBRS PROGRAMS06GM008224 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI SILVA, WALTER I · 1989 to 2008
$28.0M
RISE Option III: MBRS RISE at the UPR Medical Sciences CampusR25GM061838 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI CADILLA, CARMEN LYDIA · 2000 to 2021
$25.5M
Thyroid hormones and synaptic functionU54NS039408 · NINDS · UNIVERSIDAD CENTRAL DEL CARIBE · PI BYKHOVSKAIA, MARIA · 1999 to 2012
$14.0M
TRANSLATIONAL PROTEOMICS CENTERG12MD007600 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI FERNANDEZ-REPOLLET, EMMA · 2012 to 2016
$11.0M
Synaptic Remodeling and Thyroid HormonesS06GM050695 · NIGMS · UNIVERSIDAD CENTRAL DEL CARIBE · PI CUBANO, LUIS ANGEL · 1994 to 2009
$10.7M
NCRR NIH HHS G12 RR003050NCRR NIH HHS G12 RR003051NCRR NIH HHS G12RR03051NIGMS NIH HHS 5R25 GM061838-07NIGMS NIH HHS R25 GM061838NIGMS NIH HHS S06 GM008224NIGMS NIH HHS S06 GM050695NIMHD NIH HHS G12 MD007600NINDS NIH HHS U54 NS039408
6 · The paper itself

Abstract

The Saccharomyces cerevisiae APN1 gene that participates in base excision repair has been localized both in the nucleus and the mitochondria. APN1 deficient cells (apn1 Delta) show increased mutation frequencies in mitochondrial DNA (mtDNA) suggesting that APN1 is also important for mtDNA stability. To understand APN1-dependent mtDNA repair processes we studied the formation and repair of mtDNA lesions in cells exposed to methyl methanesulfonate (MMS). We show that MMS induces mtDNA damage in a dose-dependent fashion and that deletion of the APN1 gene enhances the susceptibility of mtDNA to MMS. Repair kinetic experiments demonstrate that in wild-type cells (WT) it takes 4 hr to repair the damage induced by 0.1% MMS, whereas in the apn1 Delta strain there is a lag in mtDNA repair that results in significant differences in the repair capacity between the two yeast strains. Analysis of lesions in nuclear DNA (nDNA) after treatment with 0.1% MMS shows a significant difference in the amount of nDNA lesions between WT and apn1 Delta cells. Interestingly, comparisons between nDNA and mtDNA damage show that nDNA is more sensitive to the effects of MMS treatment. However, both strains are able to repair the nDNA lesions, contrary to mtDNA repair, which is compromised in the apn1 Delta mutant strain. Therefore, although nDNA is more sensitive than mtDNA to the effects of MMS, deletion of APN1 has a stronger phenotype in mtDNA repair than in nDNA. These results highlight the prominent role of APN1 in the repair of environmentally induced mtDNA damage.

Indexed as

AlkylationDNA DamageDNA, FungalDNA, MitochondrialDNA RepairDNA Repair EnzymesEndodeoxyribonucleasesGene DeletionKineticsMitochondriaPolymerase Chain ReactionSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsApn1 protein, S cerevisiaeDNA, FungalDNA, MitochondrialDNA Repair EnzymesEndodeoxyribonucleasesSaccharomyces cerevisiae Proteins

Identifiers

PMID19197988
PMCPMC2858446
OpenAlexW2022034523

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.