Evidence map›Paper›PMID 19196963›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group.

Woon Ki Lim, Jörg Rösgen, S Walter Englander

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 388 citations in OpenAlex.

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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Woon Ki LimDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jörg Rösgen
S Walter Englander
Pusan National University · KRThe University of Texas Medical Branch at Galveston · USUniversity of Pennsylvania · US

Funding

Protein structure and function by hydrogen exchange mass spectrometry analysisR01GM031847 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ENGLANDER, S. WALTER · 1985 to 2017
$6.3M
Osmolytes on protein structure and energeticsR01GM049760 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ROSGEN, JORG · 1993 to 2014
$4.3M
Protein dynamics studies by hydrogen exchangeR01GM075105 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ENGLANDER, S. WALTER · 2005 to 2008
$951k
NIGMS NIH HHS GM049760NIGMS NIH HHS GM31847NIGMS NIH HHS GM75105NIGMS NIH HHS R01 GM031847NIGMS NIH HHS R01 GM049760NIGMS NIH HHS R01 GM075105
6 · The paper itself

Abstract

The mechanism by which urea and guanidinium destabilize protein structure is controversial. We tested the possibility that these denaturants form hydrogen bonds with peptide groups by measuring their ability to block acid- and base-catalyzed peptide hydrogen exchange. The peptide hydrogen bonding found appears sufficient to explain the thermodynamic denaturing effect of urea. Results for guanidinium, however, are contrary to the expectation that it might H-bond. Evidently, urea and guanidinium, although structurally similar, denature proteins by different mechanisms.

Indexed as

GuanidineHydrogen BondingPeptidesProtein DenaturationProteinsThermodynamicsUreaGuanidinePeptidesProteinsUrea

Identifiers

PMID19196963
PMCPMC2650309
OpenAlexW2125823338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.