Evidence map›Paper›PMID 19196958›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Phosphorylated self-peptides alter human leukocyte antigen class I-restricted antigen presentation and generate tumor-specific epitopes.

Jan Petersen, Stephanie J Wurzbacher, Nicholas A Williamson, Sri H Ramarathinam, Hugh H Reid, Ashish K N Nair, Anne Y Zhao, Roza Nastovska, Geordie Rudge, Jamie Rossjohn and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
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  5. Review
  6. Tumor Antigens beyond the Human Exome.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Circular RNA vaccine in disease prevention and treatment.Signal transduction and targeted therapy · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Mitochondrial Proteins as Source of Cancer Neoantigens.International journal of molecular sciences · 2022
    Review
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jan PetersenProtein Crystallography Unit, Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Victoria 3800, Australia.
Stephanie J Wurzbacher
Nicholas A Williamson
Sri H Ramarathinam
Hugh H Reid
Ashish K N Nair
Anne Y Zhao
Roza Nastovska
Geordie Rudge
Jamie Rossjohn
Anthony W Purcell
University of Melbourne · AUMonash University · AU

Funding

ER PROTEINS EFFECT ON CLASS I MHC ASSEMBLYR01GM057428 · NIGMS · UNIVERSITY OF SOUTH DAKOTA · PI SOLHEIM, JOYCE C · 1998 to 2009
$1.5M
NIGMS NIH HHS GM057428-06NIGMS NIH HHS R01 GM057428
6 · The paper itself

Abstract

Human leukocyte antigen (HLA) class I molecules present a variety of posttranslationally modified epitopes at the cell surface, although the consequences of such presentation remain largely unclear. Phosphorylation plays a critical cellular role, and deregulation in phosphate metabolism is associated with disease, including autoimmunity and tumor immunity. We have solved the high-resolution structures of 3 HLA A2-restricted phosphopeptides associated with tumor immunity and compared them with the structures of their nonphosphorylated counterparts. Phosphorylation of the epitope was observed to affect the structure and mobility of the bound epitope. In addition, the phosphoamino acid stabilized the HLA peptide complex in an epitope-specific manner and was observed to exhibit discrete flexibility within the antigen-binding cleft. Collectively, our data suggest that phosphorylation generates neoepitopes that represent demanding targets for T-cell receptor ligation. These findings provide insights into the mode of phosphopeptide presentation by HLA as well as providing a platform for the rational design of a generation of posttranslationally modified tumor vaccines.

Indexed as

Amino Acid SequenceCrystallography, X-RayEpitopesHistocompatibility Antigens Class IHumansPeptidesPhosphorylationProtein ConformationEpitopesHistocompatibility Antigens Class IPeptides

Identifiers

PMID19196958
PMCPMC2650342
OpenAlexW2010915535

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.