Evidence map›Paper›PMID 19195486›Full record

ArticleImmunology letters2009

In vitro and in vivo differentiated effector CD8 T cells display divergent histone acetylation patterns within the Ifng locus.

Suman Bandyopadhyay, Harry Z Qui, Adam J Adler

Open access · greenAbstract readComparative Study
In one paragraph

Article in Immunology letters, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. IκBζ is essential for natural killer cell activation in response to IL-12 and IL-18.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Suman BandyopadhyayDepartment of Immunology, University of Connecticut Health Center, Farmington, CT 06030-1601, USA.
Harry Z Qui
Adam J Adler
UConn Health · US

Funding

Redirecting T Cell Responses to Self/Tumor Antigens Using Enforced CostimulationR01CA109339 · NCI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ADLER, ADAM J, VELLA, ANTHONY T · 2004 to 2015
$2.9M
Mechanisms of Effector CD4 Cell TolerizationR01AI057441 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ADLER, ADAM J · 2004 to 2008
$1.6M
Mechanisms of Effector CD4 Cell TolerizationR56AI057441 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ADLER, ADAM J · 2009 to 2009
$383k
NCI NIH HHS CA109339NCI NIH HHS R01 CA109339NIAID NIH HHS AI057441NIAID NIH HHS R01 AI057441NIAID NIH HHS R56 AI057441
6 · The paper itself

Abstract

Epigenetic remodeling of genes encoding effector cytokines that permit accessibility to the transcriptional machinery is a central event in the differentiation of naive T cells into effectors that can attack pathogens and tumors. Covalent modifications of histones that cause a loosening of nucleosomal structures occur not only in promoter regions, but also at upstream and downstream enhancer elements that integrate various cellular stimuli to modulate the rate of transcriptional initiation. This knowledge derives mostly from the analysis of in vitro differentiated effector T cells. Here, we compared acetylation of histone H3 (AcH3) at several sites within the Ifng locus in CD8 T cells that underwent effector differentiation in vitro vs. in vivo. While AcH3 was similar at the proximal promoter, it displayed a reciprocal pattern at two well-characterized upstream and downstream sites. These data suggest that certain epigenetic remodeling events may be artifactual consequences of in vitro culturing conditions, and indicate the importance of using in vivo models to study effector cytokine gene remodeling.

Indexed as

AcetylationAdoptive TransferAnimalsCD8-Positive T-LymphocytesCell DifferentiationCells, CulturedChromatin Assembly and DisassemblyChromatin ImmunoprecipitationCytotoxicity, ImmunologicGene Expression RegulationHemagglutininsHistonesInterferon-gammaLymphocyte ActivationMiceMice, TransgenicHemagglutininsHistonesInterferon-gammaReceptors, Antigen, T-Cell

Identifiers

PMID19195486
PMCPMC2683175
OpenAlexW2078852840

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.