Evidence map›Paper›PMID 19194792›Full record

ArticleVirus genes2009

Molecular characterization of an Indian isolate of Banana bunchy top virus based on six genomic DNA components.

Radha Vishnoi, Shri Krishna Raj, Vivek Prasad

Abstract read
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In one paragraph

Article in Virus genes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 32 citations in OpenAlex.

  1. Detection andVirusdisease · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Molecular Characterization of Geographically Different Banana bunchy top virus Isolates in India.Indian journal of virology : an official organ of Indian Virological Society · 2010
    Article
  8. Advances in Small Isometric Multicomponent ssDNA Viruses Infecting Plants.Indian journal of virology : an official organ of Indian Virological Society · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Radha VishnoiPlant Molecular Virology Lab, National Botanical Research Institute, Lucknow, 226 001, India.
Shri Krishna Raj
Vivek Prasad
National Botanical Research Institute · INUniversity of Lucknow · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Banana bunchy top virus (BBTV) is a single-stranded circular DNA virus of the genus Babuvirus, belonging to family Nanoviridae. The six genomic DNA components of Indian (Lucknow) isolate of BBTV were amplified by polymerase chain reaction (PCR) with specific primers using total DNA extracted from banana tissues showing typical symptoms of banana bunchy top disease (BBTD). The resulting ~1.1 Kb amplicons were cloned and sequenced. Analysis of sequence data revealed the presence of six full-length components of BBTV: DNA-R (1111 bp), DNA-U3 (1060 bp), DNA-S (1075 bp), DNA-M (1048 bp), DNA-C (1018 bp), and DNA-N (1096 bp). Comparisons of sequence data of the six DNA components of the BBTV Lucknow isolate revealed highest identities with sequences of other BBTV isolates from the South Pacific group: [DNA-R (98%), DNA-U3 (93%), DNA-S (100%), DNA-M (98%), DNA-C (97%), and DNA-N (99%)]. A phylogenetic analysis revealed a close relationship of the Lucknow isolate with BBTV isolates of South Pacific group rather than those of the Asian group. Based on these analyses the virus has been classified as BBTV Lucknow, a new member of South Pacific group.

Indexed as

Amino Acid SequenceBabuvirusBase SequenceCluster AnalysisDNA PrimersDNA, ViralIndiaMolecular Sequence DataMusaPhylogenyPlant DiseasesPolymerase Chain ReactionSequence AlignmentSequence Analysis, DNASequence HomologyDNA PrimersDNA, Viral

Identifiers

PMID19194792
OpenAlexW1968899827

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.