Evidence map›Paper›PMID 19191492›Full record

ArticleJournal of the American Chemical Society2009

Phthalocyanine dimerization-based molecular beacons using near-IR fluorescence.

Irina V Nesterova, S Sibel Erdem, Serhii Pakhomov, Robert P Hammer, Steven A Soper

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Review
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  11. Review
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  14. Article
  15. NIR dyes for bioimaging applications.Current opinion in chemical biology · 2010
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Irina V NesterovaDepartment of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA.
S Sibel Erdem
Serhii Pakhomov
Robert P Hammer
Steven A Soper

Funding

High Throughput Modular Microfluidic Systems for Drug Discovery/DevelopmentR01EB006639 · NIBIB · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI SOPER, STEVEN ALLAN · 2007 to 2010
$2.6M
NIBIB NIH HHS R01 EB-006639NIBIB NIH HHS R01 EB006639
6 · The paper itself

Abstract

Herein we demonstrate the use of a novel dimerization-based molecular beacon (MB) probe consisting of two metallo-phthalocyanine (Pc) fluorophores that use near-IR fluorescence, appropriate for highly specific and sensitive in vivo and/or in vitro DNA/RNA detection. Pc's possess a propensity to form nonfluorescent H-dimers that is utilized as the molecular "off" switch in the closed MB conformation. The "on" switch, which is generated when the solution target binds to the loop of the MB forming the open form, also provides two fluorophores for transduction resulting in a doubling of the extinction coefficient and improving the resulting fluorescence yield compared to a classical single-fluorophore/quencher MB system. In addition, the Pc-based MBs possess high thermal, photo, and chemical stabilities that are essential for many highly sensitive applications, such as molecular imaging. The dimer-based MBs were obtained using a simple single-step synthesis procedure and demonstrated excellent quenching efficiencies (98%) as well as a high signal-to-background ratio (approximately 60) exceeding the performance characteristics of many conventionally available MB probes.

Indexed as

DimerizationDNAIndolesIsoindolesModels, MolecularNucleic Acid ConformationOligonucleotidesPigments, BiologicalRNASpectrometry, FluorescenceSpectroscopy, Near-InfraredDNAIndolesIsoindolesOligonucleotidesphthalocyaninePigments, BiologicalRNA

Identifiers

PMID19191492
PMCPMC2684671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.