Evidence map›Paper›PMID 19188684›Full record

ArticleThe Journal of clinical investigation2009

Somatic mutation and functional polymorphism of a novel regulatory element in the HGF gene promoter causes its aberrant expression in human breast cancer.

Jihong Ma, Marie C DeFrances, Chunbin Zou, Carla Johnson, Robert Ferrell, Reza Zarnegar

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

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  9. STRs: Ancient Architectures of the Genome beyond the Sequence.Journal of molecular neuroscience : MN · 2021
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  13. Effects ofOncoTargets and therapy · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jihong MaDivision of Experimental Pathology, Department of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, USA.
Marie C DeFrances
Chunbin Zou
Carla Johnson
Robert Ferrell
Reza Zarnegar
University of Pittsburgh · US

Funding

Mechanisms of Met Induced Hepatocytes SurvivalR01CA095782 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZARNEGAR, REZA · 2002 to 2015
$3.2M
HGF Gene Transcription and Function in the LiverR01ES006109 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZARNEGAR, REZA · 1993 to 2006
$2.2M
NCI NIH HHS 2R01CA095782-06NCI NIH HHS R01 CA095782NIEHS NIH HHS 5R01ES06109-14NIEHS NIH HHS R01 ES006109
6 · The paper itself

Abstract

The HGF gene is transcriptionally silenced in normal differentiated breast epithelial cells, but its repression fails to occur in mammary carcinoma tissues and cell lines. The molecular mechanisms underpinning aberrant HGF expression in breast cancer cells are unknown. Here we report the discovery of a DNA element located 750 bp upstream from the transcription start site in the human HGF promoter that acts as a transcriptional repressor and is a target of deletion mutagenesis in human breast cancer cells and tissues. This HGF promoter element consists of a mononucleotide repeat of 30 deoxyadenosines (30As), which we have termed "deoxyadenosine tract element" (DATE). Functional studies revealed that truncation mutations within DATE have profound local and global effects on the HGF promoter region by modulating chromatin structure and DNA-protein interactions, leading to constitutive activation of the HGF promoter in human breast carcinoma cell lines. We found that 51% of African Americans and 15% of individuals of mixed European descent with breast cancer harbor a truncated DATE variant (25As or fewer) in their breast tumors and that the truncated allele is associated with cancer incidence and aberrant HGF expression. Notably, breast cancer patients with the truncated DATE variant are substantially younger than those with a wild-type genotype. We also suggest that DATE may be used as a potential genetic marker to identify individuals with a higher risk of developing breast cancer.

Indexed as

AdultAge FactorsBinding SitesBiomarkersBlack or African AmericanBreast NeoplasmsCarcinomaCCAAT-Enhancer-Binding Protein-betaCell Line, TumorChromatin Assembly and DisassemblyDNADNA-Binding ProteinsFemaleGene Expression Regulation, NeoplasticGenotypeHepatocyte Growth FactorBiomarkersCCAAT-Enhancer-Binding Protein-betaDNADNA-Binding ProteinsHepatocyte Growth FactorHGF protein, humanMET protein, humanPoly APoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) Polymerasespoly(dA)Proto-Oncogene Proteins c-metReceptors, Growth FactorRNA, Small Interfering

Identifiers

PMID19188684
PMCPMC2648687
OpenAlexW2119139616

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.