Evidence map›Paper›PMID 19187519›Full record

ArticleTropical medicine & international health : TM & IH2009

A new approach to characterize populations of Schistosoma mansoni from humans: development and assessment of microsatellite analysis of pooled miracidia.

B Hanelt, M L Steinauer, I N Mwangi, G M Maina, L E Agola, G M Mkoji, E S Loker

Abstract readEvaluation Study
In one paragraph

Article in Tropical medicine & international health : TM & IH, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review: analysis of parasite and other skewed counts.Tropical medicine & international health : TM & IH · 2012
    Review
  12. Article
  13. Article
  14. Applying evolutionary genetics to schistosome epidemiology.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

B HaneltDepartment of Biology, University of New Mexico, Albuquerque, NM 87131, USA. bhanelt@unm.edu
M L Steinauer
I N Mwangi
G M Maina
L E Agola
G M Mkoji
E S Loker

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2003 to 2011
$16.7M
Determinants of resistance in human schistosomiasisR01AI053695 · NIAID · UNIVERSITY OF GEORGIA (UGA) · PI COLLEY, DANIEL G · 2003 to 2014
$5.2M
EVOLUTION OF SCHISTOSOMA MANSONI AND ITS SNAIL HOSTSR01AI044913 · NIAID · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 1999 to 2008
$2.2M
NCRR NIH HHS 1P20RR18754NCRR NIH HHS P20 RR018754NIAID NIH HHS AI044913NIAID NIH HHS R01 AI044913NIAID NIH HHS R01 AI053695NIAID NIH HHS R01AI053695
6 · The paper itself

Abstract

objectivesTo develop and assess a microsatellite technique to characterize populations of Schistosoma mansoni from humans.

methodsFor each of five patients, we calculated the allele count and frequency at 11 loci for several pools of miracidia (50 and 100), and compared these to population values, determined by amplifying microsatellites from 186 to 200 individual miracidia per patient.

resultsWe were able to detect up to 94.5% of alleles in pools. Allele count and frequency strongly and significantly correlated between singles and pools; marginally significant differences (P < 0.05) were detected for one patient (pools of 50) for allele frequencies and for two patients (pools of 100) for allele counts. Kato-Katz egg counts and number of alleles per pool did not co-vary, indicating that further direct comparisons of the results from these two techniques are needed.

conclusionsAllele counts and frequency profiles from pooling provide important information about infection intensity and complexity, beyond that obtained from traditional methods. Although we are not advocating use of pooling to replace individual genotyping studies, it can potentially be useful in certain applications as a rapid and cost effective screening method for studies of S. mansoni population genetics, or as a more informative way to quantify and characterize human worm populations.

Indexed as

Microsatellite RepeatsAdultAnimalsDNA, HelminthFecesGene FrequencyHumansMaleParasite Egg CountSchistosoma mansoniSchistosomiasis mansoniSpecimen HandlingDNA, Helminth

Identifiers

PMID19187519
PMCPMC2892310

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.