Evidence map›Paper›PMID 19187211›Full record

ArticleFEMS microbiology ecology2009

Molecular characterization and in situ quantification of anoxic arsenite-oxidizing denitrifying enrichment cultures.

Wenjie Sun, Reyes Sierra-Alvarez, Nuria Fernandez, Jose Luis Sanz, Ricardo Amils, Antje Legatzki, Raina M Maier, Jim A Field

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. ArxA FromFrontiers in microbiology · 2019
    Article
  4. Article
  5. Article
  6. Article
  7. Arsenic-transforming microbes and their role in biomining processes.Environmental science and pollution research international · 2013
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Anaerobic oxidation of arsenite linked to chlorate reduction.Applied and environmental microbiology · 2010
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Wenjie SunDepartment of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ, USA.
Reyes Sierra-Alvarez
Nuria Fernandez
Jose Luis Sanz
Ricardo Amils
Antje Legatzki
Raina M Maier
Jim A Field
University of Arizona · USUniversidad Autónoma de Madrid · ES

Funding

TRANSPORT OF TRACE METALS IN A POLLUTED AQUIFERP42ES004940 · NIEHS · UNIVERSITY OF ARIZONA · PI Bernardo Lemos · 1990 to 2026
$68.1M
NIEHS NIH HHS 2 P42 ES04940-11NIEHS NIH HHS P42 ES004940
6 · The paper itself

Abstract

To explore the bacteria involved in the oxidation of arsenite (As(III)) under denitrifying conditions, three enrichment cultures (ECs) and one mixed culture (MC) were characterized that originated from anaerobic environmental samples. The oxidation of As(III) (0.5 mM) was dependent on NO(3) (-) addition and N(2) formation was dependent on As(III) addition. The ratio of N(2)-N formed to As(III) fed approximated the expected stoichiometry of 2.5. A 16S rRNA gene clone library analysis revealed three predominant phylotypes. The first, related to the genus Azoarcus from the division Betaproteobacteria, was found in the three ECs. The other two predominant phylotypes were closely related to the genera Acidovorax and Diaphorobacter within the Comamonadaceae family of Betaproteobacteria, and one of these was present in all of the cultures examined. FISH confirmed that Azoarcus accounted for a large fraction of bacteria present in the ECs. The Azoarcus clones had 96% sequence homology with Azoarcus sp. strain DAO1, an isolate previously reported to oxidize As(III) with nitrate. FISH analysis also confirmed that Comamonadaceae were present in all cultures. Pure cultures of Azoarcus and Diaphorobacter were isolated and shown to be responsible for nitrate-dependent As(III) oxidation. These results, taken as a whole, suggest that bacteria within the genus Azoarcus and the family Comamonadaceae are involved in the observed anoxic oxidation of As(III).

Indexed as

ArsenitesAzoarcusComamonadaceaeCulture MediaGene LibraryGenes, rRNAHydroxybutyratesNitratesOxidation-ReductionPhylogenyRNA, BacterialRNA, Ribosomal, 16SSequence Analysis, DNAarseniteArsenitesCulture MediaHydroxybutyratesNitratesRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID19187211
PMCPMC4532341
OpenAlexW1741837683

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.