Evidence map›Paper›PMID 19187034›Full record

ArticleBiochemistry2009

Characterization of the peroxidase mechanism upon reaction of prostacyclin synthase with peracetic acid. Identification of a tyrosyl radical intermediate.

Hui-Chun Yeh, Gary J Gerfen, Jinn-Shyan Wang, Ah-Lim Tsai, Lee-Ho Wang

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. The enzymology of the human prostanoid pathway.Molecular biology reports · 2020
    Review
  2. Article
  3. Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz.Journal of the American Chemical Society · 2011
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hui-Chun YehDivision of Hematology, Department of Internal Medicine, University of Texas Health Science Center at Houston, 6431 Fannin, Houston, Texas 77030, USA.
Gary J Gerfen
Jinn-Shyan Wang
Ah-Lim Tsai
Lee-Ho Wang
Albert Einstein College of Medicine · USFu Jen Catholic University · TW

Funding

STRUCTURE/FUNCTION &REACTION MECHANISM OF PGHS &ENOSR01GM044911 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TSAI, AH-LIM · 1992 to 2008
$2.2M
Thromboxane synthases-enzymology and gene regulationR01HL060625 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WANG, LEE-HO · 1998 to 2007
$1.5M
Proton Crystallography of Membrane Proteins Using High Frequency ENDORR01GM075920 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI GERFEN, GARY J. · 2006 to 2009
$713k
NHLBI NIH HHS HL60625NHLBI NIH HHS R01 HL060625NIGMS NIH HHS GM075920NIGMS NIH HHS GM44911NIGMS NIH HHS R01 GM044911NIGMS NIH HHS R01 GM075920
6 · The paper itself

Abstract

Prostacyclin synthase (PGIS) is a membrane-bound class III cytochrome P450 that catalyzes an isomerization of prostaglandin H(2), an endoperoxide, to prostacyclin. We report here the characterization of the PGIS intermediates in reactions with other peroxides, peracetic acid (PA), and iodosylbenzene. Rapid-scan stopped-flow experiments revealed an intermediate with an absorption spectrum similar to that of compound ES (Cpd ES), which is an oxo-ferryl (Fe(IV)O) plus a protein-derived radical. Cpd ES, formed upon reaction with PA, has an X-band (9 GHz) EPR signal of g = 2.0047 and a half-saturation power, P(1/2), of 0.73 mW. High-field (130 GHz) EPR reveals the presence of two species of tyrosyl radicals in Cpd ES with their g-tensor components (g(x), g(y), g(z)) of 2.00970, 2.00433, 2.00211 and 2.00700, 2.00433, 2.00211 at a 1:2 ratio, indicating that one is involved in hydrogen bonding and the other is not. The line width of the g = 2 signal becomes narrower, while its P(1/2) value becomes smaller as the reaction proceeds, indicating migration of the unpaired electron to an alternative site. The rate of electron migration ( approximately 0.2 s(-1)) is similar to that of heme bleaching, suggesting the migration is associated with the enzymatic inactivation. Moreover, a g = 6 signal that is presumably a high-spin ferric species emerges after the appearance of the amino acid radical and subsequently decays at a rate comparable to that of enzymatic inactivation. This loss of the g = 6 species thus likely indicates another pathway leading to enzymatic inactivation. The inactivation, however, was prevented by the exogenous reductant guaiacol. The studies of PGIS with PA described herein provide a mechanistic model of a peroxidase reaction catalyzed by the class III cytochromes P450.

Indexed as

CatalysisCrystallography, X-RayCytochrome P-450 Enzyme SystemFree RadicalsHumansIntramolecular OxidoreductasesIodobenzenesModels, ChemicalPeracetic AcidPeroxidasesPeroxidesRecombinant ProteinsTyrosineCytochrome P-450 Enzyme SystemFree RadicalsIntramolecular OxidoreductasesIodobenzenesiodosobenzenePeracetic AcidPeroxidasesPeroxidesprostacyclin synthetaseRecombinant ProteinsTyrosinetyrosyl radical Y(D)

Identifiers

PMID19187034
PMCPMC2849756
OpenAlexW2028876973

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.