Evidence map›Paper›PMID 19186150›Full record

ArticleBiophysical journal2009

UVA generates pyrimidine dimers in DNA directly.

Yong Jiang, Mahir Rabbi, Minkyu Kim, Changhong Ke, Whasil Lee, Robert L Clark, Piotr A Mieczkowski, Piotr E Marszalek

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 162 citations in OpenAlex.

  1. Article
  2. Linking UV-induced DNA damage with base pair sequences.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
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  7. Review
  8. Exploring a chemical scaffold for rapid and selective photoaffinity labelling of non-ribosomal peptide synthetases in living bacterial cells.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Mechanisms of UV-induced mutations and skin cancer.Genome instability & disease · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yong JiangCenter for Biologically Inspired Materials and Material Systems, Duke University, Durham, North Carolina, USA.
Mahir Rabbi
Minkyu Kim
Changhong Ke
Whasil Lee
Robert L Clark
Piotr A Mieczkowski
Piotr E Marszalek
Duke University · USBinghamton University · USDuke Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is increasing evidence that UVA radiation, which makes up approximately 95% of the solar UV light reaching the Earth's surface and is also commonly used for cosmetic purposes, is genotoxic. However, in contrast to UVC and UVB, the mechanisms by which UVA produces various DNA lesions are still unclear. In addition, the relative amounts of various types of UVA lesions and their mutagenic significance are also a subject of debate. Here, we exploit atomic force microscopy (AFM) imaging of individual DNA molecules, alone and in complexes with a suite of DNA repair enzymes and antibodies, to directly quantify UVA damage and reexamine its basic mechanisms at a single-molecule level. By combining the activity of endonuclease IV and T4 endonuclease V on highly purified and UVA-irradiated pUC18 plasmids, we show by direct AFM imaging that UVA produces a significant amount of abasic sites and cyclobutane pyrimidine dimers (CPDs). However, we find that only approximately 60% of the T4 endonuclease V-sensitive sites, which are commonly counted as CPDs, are true CPDs; the other 40% are abasic sites. Most importantly, our results obtained by AFM imaging of highly purified native and synthetic DNA using T4 endonuclease V, photolyase, and anti-CPD antibodies strongly suggest that CPDs are produced by UVA directly. Thus, our observations contradict the predominant view that as-yet-unidentified photosensitizers are required to transfer the energy of UVA to DNA to produce CPDs. Our results may help to resolve the long-standing controversy about the origin of UVA-produced CPDs in DNA.

Indexed as

DNA DamageUltraviolet RaysAntibodiesDeoxyribodipyrimidine Photo-LyaseDeoxyribonuclease (Pyrimidine Dimer)DNAEscherichia coliMicroscopy, Atomic ForcePlasmidsPyrimidine DimersSensitivity and SpecificityViral ProteinsWaterAntibodiesDeoxyribodipyrimidine Photo-LyaseDeoxyribonuclease (Pyrimidine Dimer)DNAendonuclease V, phage T4Pyrimidine DimersViral ProteinsWater

Identifiers

PMID19186150
PMCPMC2716568
OpenAlexW2063416510

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.