Evidence map›Paper›PMID 19185921›Full record

ArticleMolecular immunology2009

Functional CD1d and/or NKT cell invariant chain transcript in horse, pig, African elephant and guinea pig, but not in ruminants.

Frank A Looringh van Beeck, Peter Reinink, Roel Hermsen, Dirk M Zajonc, Marielle J Laven, Axel Fun, Milana Troskie, Nico J Schoemaker, Darshana Morar, Johannes A Lenstra and 4 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Molecular immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. CD1: A Singed Cat of the Three Antigen Presentation Systems.Archivum immunologiae et therapiae experimentalis · 2017
    Review
  12. Mammalian CD1 and MR1 genes.Immunogenetics · 2016
    Review
  13. Natural killer cells in host defense against veterinary pathogens.Veterinary immunology and immunopathology · 2015
    Review
  14. Lipid and small-molecule display by CD1 and MR1.Nature reviews. Immunology · 2015
    Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Frank A Looringh van BeeckDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, University Utrecht, Utrecht, The Netherlands.
Peter Reinink
Roel Hermsen
Dirk M Zajonc
Marielle J Laven
Axel Fun
Milana Troskie
Nico J Schoemaker
Darshana Morar
Johannes A Lenstra
Lonneke Vervelde
Victor P M G Rutten
Willem van Eden
Ildiko Van Rhijn
Utrecht University · NLUniversity of Pretoria · ZALa Jolla Institute for Immunology · USNetherlands Environmental Assessment Agency · NL

Funding

Wellcome TrustWellcome Trust GR078283
6 · The paper itself

Abstract

CD1d-restricted invariant natural killer T cells (NKT cells) have been well characterized in humans and mice, but it is unknown whether they are present in other species. Here we describe the invariant TCR alpha chain and the full length CD1d transcript of pig and horse. Molecular modeling predicts that porcine (po) invariant TCR alpha chain/poCD1d/alpha-GalCer and equine (eq) invariant TCR alpha chain/eqCD1d/alpha-GalCer form complexes that are highly homologous to the human complex. Since a prerequisite for the presence of NKT cells is the expression of CD1d protein, we performed searches for CD1D genes and CD1d transcripts in multiple species. Previously, cattle and guinea pig have been suggested to lack CD1D genes. The CD1D genes of European taurine cattle (Bos taurus) are known to be pseudogenes because of disrupting mutations in the start codon and in the donor splice site of the first intron. Here we show that the same mutations are found in six other ruminants: African buffalo, sheep, bushbuck, bongo, N'Dama cattle, and roe deer. In contrast, intact CD1d transcripts were found in guinea pig, African elephant, horse, rabbit, and pig. Despite the discovery of a highly homologous NKT/CD1d system in pig and horse, our data suggest that functional CD1D and CD1d-restricted NKT cells are not universally present in mammals.

Indexed as

Amino Acid SequenceAnimalsAntigens, CD1dAntigens, Differentiation, B-LymphocyteCatsCattleDogsElephantsGuinea PigsHistocompatibility Antigens Class IIHorsesHumansModels, MolecularMolecular Sequence DataNatural Killer T-CellsRNA, MessengerAntigens, CD1dAntigens, Differentiation, B-LymphocyteHistocompatibility Antigens Class IIinvariant chainRNA, Messenger

Identifiers

PMID19185921
PMCPMC2669151
OpenAlexW2131618229

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.