Evidence map›Paper›PMID 19185023›Full record

ArticleJournal of neuroscience research2009

PPTX, a pentraxin domain-containing protein, interacts with the T1 domain of K v 4.

Margaret Harvey, Joerg Karolat, Yoshihisa Sakai, Bernd Sokolowski

Abstract read
In one paragraph

Article in Journal of neuroscience research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 83% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Margaret HarveyDepartment of Otolaryngology-HNS, Otology Laboratory, University of South Florida College of Medicine, Tampa, Florida 33612, USA.
Joerg Karolat
Yoshihisa Sakai
Bernd Sokolowski
University of South Florida · US

Funding

DEVELOPMENT OF EXCITATION IN HAIR CELLSR01DC004295 · NIDCD · UNIVERSITY OF SOUTH FLORIDA · PI SOKOLOWSKI, BERND H · 2000 to 2015
$4.1M
NIDCD NIH HHS R01 DC004295NIDCD NIH HHS R01DC004295
6 · The paper itself

Abstract

Voltage-gated K(+) (K(v)) channels reside as tetramers in the membrane. The events that coordinate folding, trafficking, and tetramerization are mediated by an array of associated proteins and phospholipids whose identification is vital to understanding the dynamic nature of channel expression and activity. An interaction between an A-type K(+) channel, K(v)4.2, and a protein containing a pentraxin domain (PPTX) was demonstrated in the cochlea (Duzhyy et al. [ 2005] J. Biol. Chem. 280:15165-15172). Here, we present results based on fold recognition and homology modeling that revealed the tetramerization (T1) domain of K(v)4.2 as a potential docking site for interacting proteins such as PPTX. By using this model, putative sites were experimentally tested with the yeast two-hybrid system to assay interactions between PPTX and the T1 domain of K(v)4.2 wild type (wt) and mutants (mut). Results showed that amino acid residues 86 and 118 in the T1 domain are essential for interaction, because replacing these negatively charged with neutrally charged amino acids inhibits interactions. Cotransfections of Chinese hamster ovary cells with PPTX and K(v)4.2wt further revealed that PPTX increases K(v)4.2 wt expression in vitro when analyzing total lysates, whereas interactions with K(v)4.2 microt resulted in a decrease. These studies suggest that portions of the T1 domain can act as docking sites for proteins such as PPTX, further underscoring the significance of this domain.

Indexed as

AnimalsCarrier ProteinsChickensCHO CellsCochleaC-Reactive ProteinCricetinaeCricetulusIon Channel GatingKv Channel-Interacting ProteinsMembrane PotentialsModels, MolecularNerve Tissue ProteinsPentraxinsProtein BindingProtein ConformationCarrier ProteinsC-Reactive ProteinKv Channel-Interacting ProteinsNerve Tissue ProteinsPentraxinsSerum Amyloid P-ComponentShal Potassium Channels

Identifiers

PMID19185023
PMCPMC12671586
OpenAlexW2167350957

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.