Evidence map›Paper›PMID 19182270›Full record

ArticleThe Journal of biological chemistry2009

Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.

Nicolas Blot, Xian-Jun Wu, Jean-Claude Thomas, Juan Zhang, Laurence Garczarek, Stephan Böhm, Jun-Ming Tu, Ming Zhou, Matthias Plöscher, Lutz Eichacker and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Genomic analysis highlights a novel class of DPCF-type cyanobacteriochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2026
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  13. Molecular bases of an alternative dual-enzyme system for light color acclimation of marineProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Chromophorylation of a Novel Cyanobacteriochrome GAF Domain fromJournal of microbiology and biotechnology · 2021
    Article
  15. Article
  16. Effects of Cadmium on Bioaccumulation, Bioabsorption, and Photosynthesis inInternational journal of environmental research and public health · 2020
    Article
  17. Interplay between differentially expressed enzymes contributes to light color acclimation in marineProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. Fluorescence Properties of a Novel Cyanobacteriochrome GAF Domain fromInternational journal of molecular sciences · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 4 countries.

Nicolas BlotUPMC-Université Paris 06, Station Biologique, 29682 Roscoff, France, CNRS, UMR 7144, Groupe Plancton Océanique, 29682 Roscoff, France.
Xian-Jun Wu
Jean-Claude Thomas
Juan Zhang
Laurence Garczarek
Stephan Böhm
Jun-Ming Tu
Ming Zhou
Matthias Plöscher
Lutz Eichacker
Frédéric Partensky
Hugo Scheer
Kai-Hong Zhao
Huazhong Agricultural University · CNCentre National de la Recherche Scientifique · FRLudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most cyanobacteria harvest light with large antenna complexes called phycobilisomes. The diversity of their constituting phycobiliproteins contributes to optimize the photosynthetic capacity of these microorganisms. Phycobiliprotein biosynthesis, which involves several post-translational modifications including covalent attachment of the linear tetrapyrrole chromophores (phycobilins) to apoproteins, begins to be well understood. However, the biosynthetic pathway to the blue-green-absorbing phycourobilin (lambda(max) approximately 495 nm) remained unknown, although it is the major phycobilin of cyanobacteria living in oceanic areas where blue light penetrates deeply into the water column. We describe a unique trichromatic phycocyanin, R-PC V, extracted from phycobilisomes of Synechococcus sp. strain WH8102. It is evolutionarily remarkable as the only chromoprotein known so far that absorbs the whole wavelength range between 450 and 650 nm. R-PC V carries a phycourobilin chromophore on its alpha-subunit, and this can be considered an extreme case of adaptation to blue-green light. We also discovered the enzyme, RpcG, responsible for its biosynthesis. This monomeric enzyme catalyzes binding of the green-absorbing phycoerythrobilin at cysteine 84 with concomitant isomerization to phycourobilin. This reaction is analogous to formation of the orange-absorbing phycoviolobilin from the red-absorbing phycocyanobilin that is catalyzed by the lyase-isomerase PecE/F in some freshwater cyanobacteria. The fusion protein, RpcG, and the heterodimeric PecE/F are mutually interchangeable in a heterologous expression system in Escherichia coli. The novel R-PC V likely optimizes rod-core energy transfer in phycobilisomes and thereby adaptation of a major phytoplankton group to the blue-green light prevailing in oceanic waters.

Indexed as

ChromatinCircular DichroismCyanobacteriaEvolution, MolecularIsomerasesLyasesMolecular StructurePhycobilinsPhycocyaninPhycoerythrinPhylogenyProtein Processing, Post-TranslationalSeawaterSubstrate SpecificityChromatinIsomerasesLyasesPhycobilinsPhycocyaninPhycoerythrinphycoerythrobilinphycoviolobilin

Identifiers

PMID19182270
PMCPMC2666581
OpenAlexW2003399853

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.