Evidence map›Paper›PMID 19181870›Full record

ArticleEukaryotic cell2009

HacA-dependent transcriptional switch releases hacA mRNA from a translational block upon endoplasmic reticulum stress.

Harm J Mulder, Igor Nikolaev

Open access · diamondAbstract read
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Article in Eukaryotic cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. TheJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Review
  4. Putative Core Transcription Factors Affecting Virulence inJournal of fungi (Basel, Switzerland) · 2023
    Article
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  8. Translation Control ofInternational journal of molecular sciences · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Harm J MulderGenencor, Danisco, Archimedesweg 30, 2333 CN Leiden, The Netherlands. harm.mulder@danisco.com
Igor Nikolaev

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activation of the unfolded protein response (UPR) in eukaryotes involves the splicing of an unconventional intron from the mRNA encoding the transcriptional activator of the pathway. In Saccharomyces cerevisiae a 252-nucleotide (nt) unconventional intron is spliced out of the transcript of HAC1, changing the 3' end of the HAC1 open reading frame and relieving the transcript from a translational block in a single step. The translational block is caused by the base pairing of part of the unconventional intron with the 5'-untranslated region (5'UTR). In Aspergillus niger and other aspergilli, the unconventional intron in hacA mRNA is only 20 nt long. Since this intron is part of a stable stem-loop structure, base pairing with the 5'UTR, in contrast to the case with yeast HAC1, is not possible. However, analysis of the hacA mRNA revealed a GC-rich inverted repeat (18 base pairings). Upon the activation of the UPR, the 5'UTR of hacA mRNA is truncated by 230 nt, removing the left part of this inverted repeat. This implies a similar release of a translational block as in the case of S. cerevisiae HAC1 but in two steps. The mechanism behind the 5' truncation, which does not take place in either yeast HAC1 or mammalian xbp1 mRNA, has been hitherto unknown. Here we show that during secretion stress in A. niger, hacA transcription starts from a new start site closer to the ATG, relieving the transcript from translational attenuation. This transcriptional switch is mediated by HacA itself and the unfolded protein response element 2 (UPRE2) in the hacA promoter.

Indexed as

Protein BiosynthesisTranscription, Genetic5' Untranslated RegionsAspergillus nigerBase SequenceBasic-Leucine Zipper Transcription FactorsBinding SitesEndoplasmic ReticulumFungal ProteinsGene Expression Regulation, FungalMolecular Sequence DataNucleic Acid ConformationResponse ElementsRNA, Messenger5' Untranslated RegionsBasic-Leucine Zipper Transcription FactorsFungal ProteinsRNA, Messenger

Identifiers

PMID19181870
PMCPMC2669205
OpenAlexW2140437400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.