ArticleNucleic acids research2009
Integrating sequence with FPC fingerprint maps.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
22 citing papers in PubMed.
- The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat.Plant biotechnology journal · 2020Article
- Young inversion with multiple linked QTLs under selection in a hybrid zone.Nature ecology & evolution · 2017Article
- Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.Scientific data · 2016Article
- A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.BMC genomics · 2015Article
- Cassava genome from a wild ancestor to cultivated varieties.Nature communications · 2014Article
- Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea.BMC genomics · 2013Article
- Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.PloS one · 2013Article
- A physical map of the short arm of wheat chromosome 1A.PloS one · 2013Article
- A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes.Marine biotechnology (New York, N.Y.) · 2012Article
- Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).G3 (Bethesda, Md.) · 2012Article
- Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.BMC genomics · 2012Article
- Article
- SyMAP v3.4: a turnkey synteny system with application to plant genomes.Nucleic acids research · 2011Article
- Sequence-based physical mapping of complex genomes by whole genome profiling.Genome research · 2011Article
- Article
- Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries.BMC genomics · 2010Article
- Generation of a BAC-based physical map of the melon genome.BMC genomics · 2010Article
- JunctionViewer: customizable annotation software for repeat-rich genomic regions.BMC bioinformatics · 2010Article
- Applying small-scale DNA signatures as an aid in assembling soybean chromosome sequences.Advances in bioinformatics · 2010Article
- A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.BMC genomics · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent advances in both clone fingerprinting and draft sequencing technology have made it increasingly common for species to have a bacterial artificial clone (BAC) fingerprint map, BAC end sequences (BESs) and draft genomic sequence. The FPC (fingerprinted contigs) software package contains three modules that maximize the value of these resources. The BSS (blast some sequence) module provides a way to easily view the results of aligning draft sequence to the BESs, and integrates the results with the following two modules. The MTP (minimal tiling path) module uses sequence and fingerprints to determine a minimal tiling path of clones. The DSI (draft sequence integration) module aligns draft sequences to FPC contigs, displays them alongside the contigs and identifies potential discrepancies; the alignment can be based on either individual BES alignments to the draft, or on the locations of BESs that have been assembled into the draft. FPC also supports high-throughput fingerprint map generation as its time-intensive functions have been parallelized for Unix-based desktops or servers with multiple CPUs. Simulation results are provided for the MTP, DSI and parallelization. These features are in the FPC V9.3 software package, which is freely available.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.