Evidence map›Paper›PMID 19180471›Full record

ArticleEuropean journal of immunology2009

Molecular basis of CD4 repression by the Swi/Snf-like BAF chromatin remodeling complex.

Mimi Wan, Jianmin Zhang, Dazhi Lai, Anant Jani, Paula Prestone-Hurlburt, Lulu Zhao, Aruna Ramachandran, Gavin R Schnitzler, Tian Chi

Open access · greenAbstract read
In one paragraph

Article in European journal of immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  12. ATP-dependent chromatin remodeling in T cells.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mimi WanDepartment of Immunobiology, Yale University Medical School, New Haven, CT 06520, USA.
Jianmin Zhang
Dazhi Lai
Anant Jani
Paula Prestone-Hurlburt
Lulu Zhao
Aruna Ramachandran
Gavin R Schnitzler
Tian Chi
Yale University · USTufts University · US

Funding

BAF complexes in T cell developmentR01AI063554 · NIAID · YALE UNIVERSITY · PI CHI, TIAN H · 2005 to 2009
$1.9M
NIAID NIH HHS R01 AI063554NIAID NIH HHS R01AI063554-02
6 · The paper itself

Abstract

The Brg1/Brm-associated factor (BAF) chromatin remodeling complex directly binds the CD4 silencer and is essential for CD4 repression during T-cell development, because deletion of the ATPase subunit Brg1 or a dominant negative mutant of BAF57 each impairs CD4 repression in early thymocytes. Paradoxically, BAF57 is dispensable for remodeling nucleosomes in vitro or for binding of the BAF complex to the CD4 silencer in vivo. Thus, it is unclear whether BAF57-dependent CD4 repression involves chromatin remodeling and, if so, how the remodeling translates into CD4 repression. Here we show that nucleosomes at the CD4 silencer occupy multiple translational frames. BAF57 dominant negative mutant does not alter these frames, but reduces the accessibility of the entire silencer without affecting the flanking regions, concomitant with localized accumulation of linker histone H1 and eviction of Runx1, a key repressor of CD4 transcription that directly binds the CD4 silencer. Our data indicate that precise nucleosome positioning is not critical for the CD4 silencer function and that BAF57 participates in remodeling H1-containing chromatin at the CD4 silencer, which enables Runx1 to access the silencer and repress CD4. In addition to BAF57, multiple other subunits in the BAF complex are also dispensable for chromatin remodelling in vitro. Our data suggest that these subunits could also help remodel chromatin at a step after the recruitment of the BAF complex to target genes.

Indexed as

Gene Expression RegulationAnimalsCD4 AntigensChromatinChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneCore Binding Factor Alpha 2 SubunitHistonesMiceMice, KnockoutMutationSilencer Elements, TranscriptionalTranscription FactorsTranscription, GeneticCD4 AntigensChromatinChromosomal Proteins, Non-HistoneCore Binding Factor Alpha 2 SubunitHistonesRunx1 protein, mouseSmarce1 protein, mouseSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID19180471
PMCPMC2774848
OpenAlexW2023942843

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.