Evidence map›Paper›PMID 19177559›Full record

ArticleProtein science : a publication of the Protein Society2009

Engineering antibody fragments to fold in the absence of disulfide bonds.

Min Jeong Seo, Ki Jun Jeong, Clinton E Leysath, Andrew D Ellington, Brent L Iverson, George Georgiou

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Min Jeong SeoDepartment of Chemical Engineering, University of Texas, Austin, 78712, USA.
Ki Jun Jeong
Clinton E Leysath
Andrew D Ellington
Brent L Iverson
George Georgiou
The University of Texas at Austin · USKorea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disulfide bonds play a critical role in the stabilization of the immunoglobulin beta-sandwich sandwich. Under reducing conditions, such as those that prevail in the cytoplasm, disulfide bonds do not normally form and as a result most antibodies expressed in that compartment (intrabodies) accumulate in a misfolded and inactive state. We have developed a simple method for the quantitative isolation of antibody fragments that retain full activity under reducing conditions from large mutant libraries. In E. coli, inactivation of the cysteine oxidoreductase DsbA abolishes protein oxidation in the periplasm, which leads to the accumulation of scFvs and other disulfide-containing proteins in a reduced form. Libraries of mutant scFvs were tethered onto the inner membrane of dsbA cells and mutants that could bind fluorescently labeled antigen in the reducing periplasm were screened by Anchored Periplasmic Expression (APEx; Harvey et al., Proc Natl Acad Sci USA 2004;101:9193-9198.). Using this approach, we isolated scFv antibody variants that are fully active when expressed in the cytoplasm or when the four Cys residues that normally form disulfides are substituted by Ser residues.

Indexed as

Protein FoldingAmino Acid SequenceAntigens, BacterialBacterial ToxinsCysteineDirected Molecular EvolutionDisulfidesEnzyme-Linked Immunosorbent AssayEscherichia coliEscherichia coli ProteinsFlow CytometryGene LibraryImmunoglobulin Variable RegionMolecular Sequence DataMutationOxidation-Reductionanthrax toxinAntigens, BacterialBacterial ToxinsCysteineDisulfidesdsbA protein, E coliEscherichia coli ProteinsImmunoglobulin Variable RegionProtein Disulfide-IsomerasesSerine

Identifiers

PMID19177559
PMCPMC2708069
OpenAlexW2105270854

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.