Evidence map›Paper›PMID 19177358›Full record

ArticleProtein science : a publication of the Protein Society2009

Backbone structure of a small helical integral membrane protein: A unique structural characterization.

Richard C Page, Sangwon Lee, Jacob D Moore, Stanley J Opella, Timothy A Cross

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  8. Advances in NMR structures of integral membrane proteins.Current opinion in structural biology · 2013
    Review
  9. Review
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Richard C PageDepartment of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, USA.
Sangwon Lee
Jacob D Moore
Stanley J Opella
Timothy A Cross
National High Magnetic Field Laboratory · USUniversity of California San Diego · USFlorida State University · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Membrane Protein Structural Genomics: M. tuberculosisP01GM064676 · NIGMS · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2001 to 2005
$8.0M
DYNAMIC AND STRUCTURAL ELUCIDATION OF GRAMICIDIN A'R01AI023007 · NIAID · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 1987 to 2014
$5.1M
Four Mtb Membrane Proteins: Structure and FunctionR01AI073891 · NIAID · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2008 to 2012
$2.0M
Membrane Protein Structures:Phospholipid Bilayers (RMI)R01GM075877 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2005 to 2009
$1.4M
Membrane Protein Structure Determination by NMRF31NS054494 · NINDS · FLORIDA STATE UNIVERSITY · PI MOORE, JACOB D · 2006 to 2008
$84k
NIAID NIH HHS R01 AI073891NIAID NIH HHS R01-AI073891NIAID NIH HHS R01-AI23007NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41-EB002031NIGMS NIH HHS P01-GM64676NIGMS NIH HHS R01-GM075877NINDS NIH HHS F31 NS054494
6 · The paper itself

Abstract

The structural characterization of small integral membrane proteins pose a significant challenge for structural biology because of the multitude of molecular interactions between the protein and its heterogeneous environment. Here, the three-dimensional backbone structure of Rv1761c from Mycobacterium tuberculosis has been characterized using solution NMR spectroscopy and dodecylphosphocholine (DPC) micelles as a membrane mimetic environment. This 127 residue single transmembrane helix protein has a significant (10 kDa) C-terminal extramembranous domain. Five hundred and ninety distance, backbone dihedral, and orientational restraints were employed resulting in a 1.16 A rmsd backbone structure with a transmembrane domain defined at 0.40 A. The structure determination approach utilized residual dipolar coupling orientation data from partially aligned samples, long-range paramagnetic relaxation enhancement derived distances, and dihedral restraints from chemical shift indices to determine the global fold. This structural model of Rv1761c displays some influences by the membrane mimetic illustrating that the structure of these membrane proteins is dictated by a combination of the amino acid sequence and the protein's environment. These results demonstrate both the efficacy of the structural approach and the necessity to consider the biophysical properties of membrane mimetics when interpreting structural data of integral membrane proteins and, in particular, small integral membrane proteins.

Indexed as

AlgorithmsBacterial ProteinsEscherichia coliMembrane ProteinsMicellesModels, MolecularMycobacterium tuberculosisNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein Structure, TertiaryRecombinant Fusion ProteinsReproducibility of ResultsSpin LabelsStatistics as TopicBacterial ProteinsMembrane ProteinsMicellesRecombinant Fusion ProteinsSpin Labels

Identifiers

PMID19177358
PMCPMC2708045
OpenAlexW2080627562

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.