Evidence map›Paper›PMID 19177355›Full record

ArticleProtein science : a publication of the Protein Society2009

The oligomerization of OxyR in Escherichia coli.

Gwendowlyn S Knapp, Jerry W Tsai, James C Hu

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 7 citations in OpenAlex.

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  10. The oligomerization of CynR in Escherichia coli.Protein science : a publication of the Protein Society · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gwendowlyn S KnappDepartment of Biochemistry and Biophysics, Texas A&M University, 2128 TAMU, College Station, Texas 77843-2128, USA.
Jerry W Tsai
James C Hu
Texas A&M University · US

Funding

Protein Self-Assembly in Model MicroorganismsR01GM063652 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI HU, JAMES C · 2001 to 2004
$1.1M
NIGMS NIH HHS R01GM63652-01
6 · The paper itself

Abstract

We examine the contribution of residues at the dimer interface of the transcriptional regulator OxyR to oligomerization. Residues in contact across the dimer interface of OxyR were identified using the program Quaternary Contacts (QContacts). Site-directed mutagenesis was performed on the non-alanine or glycine residues identified in the resultant contact profile and the oligomerization ability of the mutant proteins was tested using the lambdacI repressor system to identify residues that are hot spots in OxyR. We compared the properties of these hot spots to those described in the literature from other systems. The hot spots identified in this study are not especially conserved amongst a set of OxyR orthologs.

Indexed as

AlanineAmino Acid SequenceConserved SequenceEscherichia coliEscherichia coli ProteinsModels, MolecularMutagenesis, Site-DirectedProtein BindingProtein MultimerizationProtein Structure, QuaternaryRepressor ProteinsSoftwareAlanineEscherichia coli ProteinsoxyR protein, E coliRepressor Proteins

Identifiers

PMID19177355
PMCPMC2708027
OpenAlexW4233156819

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.