Evidence map›Paper›PMID 19177346›Full record

ArticleProtein science : a publication of the Protein Society2009

Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property.

Yvonne Piotrowski, Guido Hansen, A Linda Boomaars-van der Zanden, Eric J Snijder, Alexander E Gorbalenya, Rolf Hilgenfeld

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  4. ADP-ribose and analogues bound to the deMARylating macrodomain from the bat coronavirus HKU4.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  9. Review
  10. Structural basis for dimerization and RNA binding of avian infectious bronchitis virus nsp9.Protein science : a publication of the Protein Society · 2017
    Article
  11. Article
  12. Article
  13. The macro domain as fusion tag for carrier-driven crystallization.Protein science : a publication of the Protein Society · 2017
    Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Yvonne PiotrowskiInstitute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23538 Lübeck, Germany.
Guido Hansen
A Linda Boomaars-van der Zanden
Eric J Snijder
Alexander E Gorbalenya
Rolf Hilgenfeld
Leiden University Medical Center · NLUniversity of Lübeck · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polyproteins of coronaviruses are cleaved by viral proteases into at least 15 nonstructural proteins (Nsps). Consisting of five domains, Nsp3 is the largest of these (180-210 kDa). Among these domains, the so-called X-domain is believed to act as ADP-ribose-1''-phosphate phosphatase or to bind poly(ADP-ribose). However, here we show that the X-domain of Infectious Bronchitis Virus (strain Beaudette), a Group-3 coronavirus, fails to bind ADP-ribose. This is explained on the basis of the crystal structure of the protein, determined at two different pH values. For comparison, we also describe the crystal structure of the homologous X-domain from Human Coronavirus 229E, a Group-1 coronavirus, which does bind ADP-ribose.

Indexed as

Adenosine Diphosphate RiboseAmino Acid SequenceCoronavirus 229E, HumanCrystallography, X-RayInfectious bronchitis virusModels, MolecularMolecular Sequence DataPhosphoric Monoester HydrolasesProtein BindingProtein ConformationSequence AlignmentSevere acute respiratory syndrome-related coronavirusViral Nonstructural ProteinsAdenosine Diphosphate RiboseADP-ribose 1''-phosphatePhosphoric Monoester HydrolasesViral Nonstructural Proteins

Identifiers

PMID19177346
PMCPMC2708038
OpenAlexW2028729402

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.