ArticlePlant physiology2009
Alternative splicing studies of the reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point superoxide dismutase.
Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Alternative Splicing in Plant Development and Abiotic Stress Responses: A Multifunctional Regulatory Mechanism.International journal of molecular sciences · 2026Review
- In Silico Study of Superoxide Dismutase Gene Family in Potato and Effects of Elevated Temperature and Salicylic Acid on Gene Expression.Antioxidants (Basel, Switzerland) · 2022Article
- Molecular and Biochemical Analysis of Duplicated Cytosolic CuZn Superoxide Dismutases of Rice andFrontiers in plant science · 2022Article
- Splice Variants of Superoxide Dismutases in Rice and Their Expression Profiles under Abiotic Stresses.International journal of molecular sciences · 2021Article
- Genome-Wide Evolution and Comparative Analysis of Superoxide Dismutase Gene Family in Cucurbitaceae and Expression Analysis ofFrontiers in genetics · 2021Article
- PSDX: A Comprehensive Multi-Omics Association Database ofFrontiers in plant science · 2021Article
- Recurrent water deficit causes epigenetic and hormonal changes in citrus plants.Scientific reports · 2017Article
- Genome-Wide Identification and Transcriptional Expression Analysis of Cucumber Superoxide Dismutase (SOD) Family in Response to Various Abiotic Stresses.International journal of genomics · 2017Article
- The SOD Gene Family in Tomato: Identification, Phylogenetic Relationships, and Expression Patterns.Frontiers in plant science · 2016Article
- Genome-wide identification and characterization of the superoxide dismutase gene family in Musa acuminata cv. Tianbaojiao (AAA group).BMC genomics · 2015Article
- Article
- Antioxidant Defenses in Plants with Attention to Prunus and Citrus spp.Antioxidants (Basel, Switzerland) · 2013Review
- Article
- Redox-dependent functional switching of plant proteins accompanying with their structural changes.Frontiers in plant science · 2013Article
- Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis.The Journal of biological chemistry · 2012Article
- Article
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7 authors.
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Abstract
Recent evidence has shown that alternative splicing (AS) is widely involved in the regulation of gene expression, substantially extending the diversity of numerous proteins. In this study, a subset of expressed sequence tags representing members of the reactive oxygen species gene network was selected from the PopulusDB database to investigate AS mechanisms in Populus. Examples of all known types of AS were detected, but intron retention was the most common. Interestingly, the closest Arabidopsis (Arabidopsis thaliana) homologs of half of the AS genes identified in Populus are not reportedly alternatively spliced. Two genes encoding the protein of most interest in our study (high-isoelectric-point superoxide dismutase [hipI-SOD]) have been found in black cottonwood (Populus trichocarpa), designated PthipI-SODC1 and PthipI-SODC2. Analysis of the expressed sequence tag libraries has indicated the presence of two transcripts of PthipI-SODC1 (hipI-SODC1b and hipI-SODC1s). Alignment of these sequences with the PthipI-SODC1 gene showed that hipI-SODC1b was 69 bp longer than hipI-SODC1s due to an AS event involving the use of an alternative donor splice site in the sixth intron. Transcript analysis showed that the splice variant hipI-SODC1b was differentially expressed, being clearly expressed in cambial and xylem, but not phloem, regions. In addition, immunolocalization and mass spectrometric data confirmed the presence of hipI-SOD proteins in vascular tissue. The functionalities of the spliced gene products were assessed by expressing recombinant hipI-SOD proteins and in vitro SOD activity assays.
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