Evidence map›Paper›PMID 19174563›Full record

ArticleNucleic acids research2009

Improved tetracycline repressors for gene silencing in mycobacteria.

Marcus Klotzsche, Sabine Ehrt, Dirk Schnappinger

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Immunity AgainstVaccines · 2025
    Article
  5. RecombinantVaccines · 2025
    Review
  6. Article
  7. Article
  8. Microbiology spectrum · 2023
    Article
  9. Article
  10. Status quo of tet regulation in bacteria.Microbial biotechnology · 2022
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Tuning theJournal of bacteriology · 2019
    Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Marcus KlotzscheDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.
Sabine Ehrt
Dirk Schnappinger
Cornell University · US

Funding

Conditional Expression of Mycobacterial GenesR01AI063446 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI EHRT, SABINE · 2006 to 2022
$7.2M
NIAID NIH HHS AI063446Wellcome Trust
6 · The paper itself

Abstract

Tetracycline repressor (TetR)-controlled expression systems have recently been developed for mycobacteria and proven useful for the construction of conditional knockdown mutants and their analysis in vitro and during infections. However, even though these systems allowed tight regulation of some mycobacterial genes, they only showed limited or no phenotypic regulation for others. By adapting their codon usage to that of the Mycobacterium tuberculosis genome, we created tetR genes that mediate up to approximately 50-fold better repression of reporter gene activities in Mycobacterium smegmatis and Mycobacterium bovis BCG. In addition to these repressors, for which anhydrotetracycline (atc) functions as an inducer of gene expression, we used codon-usage adaption and structure-based design to develop improved reverse TetRs, for which atc functions as a corepressor. The previously described reverse repressor TetR only functioned when expressed from a strong promoter on a multicopy plasmid. The new reverse TetRs silence target genes more efficiently and allowed complete phenotypic silencing of M. smegmatis secA1 with chromosomally integrated tetR genes.

Indexed as

Gene Expression Regulation, BacterialGene SilencingChromosomes, BacterialCodonGenes, ReporterMutationMycobacteriumMycobacterium bovisMycobacterium smegmatisMycobacterium tuberculosisRepressor ProteinsCodonRepressor Proteinstetracycline resistance-encoding transposon repressor protein

Identifiers

PMID19174563
PMCPMC2665214
OpenAlexW2049261534

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.