Evidence map›Paper›PMID 19172750›Full record

ArticleNature structural & molecular biology2008

A regulatable switch mediates self-association in an immunoglobulin fold.

Matthew F Calabrese, Catherine M Eakin, Jimin M Wang, Andrew D Miranker

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Review
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  4. The role of the IThe Journal of biological chemistry · 2020
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  6. The biofilm adhesion protein Aap fromThe Journal of biological chemistry · 2020
    Article
  7. Collagen I Weakly Interacts with the β-Sheets of βJournal of the American Chemical Society · 2020
    Article
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  9. Review
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  12. Extracellular matrix components modulate different stages in βThe Journal of biological chemistry · 2019
    Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Matthew F CalabreseDepartment of Molecular Biophysics and Biochemistry, Yale University, 260 Whitney Avenue, New Haven, Connecticut 06520-8114, USA.
Catherine M Eakin
Jimin M Wang
Andrew D Miranker
Whitney Museum of American Art · USYale University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
MOLECULAR BASIS OF FIBRIL FORMATION IN ISLET AMYLOIDR01DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 1999 to 2007
$1.9M
Fibrillogenesis pathways in diabetes and renal diseasesR56DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 2008 to 2008
$136k
NIDDK NIH HHS DK54899NIDDK NIH HHS R01 DK054899NIDDK NIH HHS R56 DK054899NIGMS NIH HHS 5T32GM07223NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

Beta-2 microglobulin (beta2m) is a globular protein that self-associates into fibrillar amyloid deposits in patients undergoing hemodialysis therapy. Formation of these beta-sheet-rich assemblies is a fundamental property of polypeptides that can be triggered by diverse conditions. For beta2m, oligomerization into pre-amyloidogenic states occurs in specific response to coordination by Cu2+. Here we report the basis for this self-association at atomic resolution. Metal is not a direct participant in the molecular interface. Rather, binding results in distal alterations enabling the formation of two new surfaces. These interact to form a closed hexameric species. The origins of this include isomerization of a buried and conserved cis-proline previously implicated in the beta2m aggregation pathway. The consequences of this isomerization are evident and reveal a molecular basis for the conversion of this robust monomeric protein into an amyloid-competent state.

Indexed as

AmyloidAmyloidosisbeta 2-MicroglobulinCopperCrystallography, X-RayElectron Spin Resonance SpectroscopyHumansHydrophobic and Hydrophilic InteractionsImmunoglobulinsIn Vitro TechniquesModels, BiologicalModels, MolecularMultiprotein ComplexesProtein FoldingProtein Interaction Domains and MotifsProtein Structure, QuaternaryAmyloidbeta 2-MicroglobulinCopperImmunoglobulinsMultiprotein Complexes

Identifiers

PMID19172750
PMCPMC2680708
OpenAlexW2031245909

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.