ArticleActa crystallographica. Section D, Biological crystallography2009
Analysis and validation of carbohydrate three-dimensional structures.
Article in Acta crystallographica. Section D, Biological crystallography, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Ten years of integrative carbohydrate structure validation with Privateer.Glycobiology · 2026Review
- N-acetylated sugars in clownfish and damselfish skin mucus as messengers involved in chemical recognition by anemone host.Scientific reports · 2025Article
- Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed.Current medicinal chemistry · 2022Article
- An Interactive View of Glycosylation.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Three-Dimensional Structures of Carbohydrates and Where to Find Them.International journal of molecular sciences · 2020Review
- Structural basis for the specificity of renin-mediated angiotensinogen cleavage.The Journal of biological chemistry · 2019Article
- Glycosaminoglycanomics: where we are.Glycoconjugate journal · 2017Review
- Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein.The EMBO journal · 2017Article
- Strategies for carbohydrate model building, refinement and validation.Acta crystallographica. Section D, Structural biology · 2017Article
- Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins.Scientific reports · 2016Article
- Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.Glycobiology · 2016Article
- Molecular dynamics simulations of glycoproteins using CHARMM.Methods in molecular biology (Clifton, N.J.) · 2015Article
- Factors affecting the computation of the 13C shielding in disaccharides.Journal of computational chemistry · 2014Article
- Molecular Interactions between Complement Factor H and Its Heparin and Heparan Sulfate Ligands.Frontiers in immunology · 2014Review
- Differential site accessibility mechanistically explains subcellular-specific N-glycosylation determinants.Frontiers in immunology · 2014Article
- Toolboxes for a standardised and systematic study of glycans.BMC bioinformatics · 2014Article
- Crystallographic model validation: from diagnosis to healing.Current opinion in structural biology · 2013Review
- The solution structure of heparan sulfate differs from that of heparin: implications for function.The Journal of biological chemistry · 2013Article
- Glycan fragment database: a database of PDB-based glycan 3D structures.Nucleic acids research · 2013Article
- Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling.PLoS computational biology · 2013Article
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Knowledge of the three-dimensional structures of the carbohydrate molecules is indispensable for a full understanding of the molecular processes in which carbohydrates are involved, such as protein glycosylation or protein-carbohydrate interactions. The Protein Data Bank (PDB) is a valuable resource for three-dimensional structural information on glycoproteins and protein-carbohydrate complexes. Unfortunately, many carbohydrate moieties in the PDB contain inconsistencies or errors. This article gives an overview of the information that can be obtained from individual PDB entries and from statistical analyses of sets of three-dimensional structures, of typical problems that arise during the analysis of carbohydrate three-dimensional structures and of the validation tools that are currently available to scientists to evaluate the quality of these structures.
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