Evidence map›Paper›PMID 19171782›Full record

ArticleGenes & development2009

A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress.

Jinsuk Kang, Matthew Gemberling, Mitsuhiro Nakamura, Frank G Whitby, Hiroshi Handa, William G Fairbrother, Dean Tantin

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
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  6. Osmosensitive transcription factors in the prolactin cell of a euryhaline teleost.Comparative biochemistry and physiology. Part A, Molecular & integrative physiology · 2023
    Article
  7. Metabolic control of induced pluripotency.Frontiers in cell and developmental biology · 2023
    Review
  8. Article
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  10. Anticipating response function in gene regulatory networks.Journal of the Royal Society, Interface · 2021
    Article
  11. Article
  12. Review
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  14. Article
  15. Article
  16. Article
  17. Article
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  19. Review
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jinsuk KangDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.
Matthew Gemberling
Mitsuhiro Nakamura
Frank G Whitby
Hiroshi Handa
William G Fairbrother
Dean Tantin
University of Utah · USBrown University · USTokyo Institute of Technology · JP

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
NCI NIH HHS P30 CA042014NCI NIH HHS P30CA042014
6 · The paper itself

Abstract

Oct1 and Oct4 are homologous transcription factors with similar DNA-binding specificities. Here we show that Oct1 is dynamically phosphorylated in vivo following exposure of cells to oxidative and genotoxic stress. We further show that stress regulates the selectivity of both proteins for specific DNA sequences. Mutation of conserved phosphorylation target DNA-binding domain residues in Oct1, and Oct4 confirms their role in regulating binding selectivity. Using chromatin immunoprecipitation, we show that association of Oct4 and Oct1 with a distinct group of in vivo targets is inducible by stress, and that Oct1 is essential for a normal post-stress transcriptional response. Finally, using an unbiased Oct1 target screen we identify a large number of genes targeted by Oct1 specifically under conditions of stress, and show that several of these inducible Oct1 targets are also inducibly bound by Oct4 in embryonic stem cells following stress exposure.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsDimerizationDNA DamageHeLa CellsHumansInverted Repeat SequencesMiceModels, MolecularMolecular Sequence DataMutationOctamer Transcription Factor-1Octamer Transcription Factor-3Oxidative StressPhosphorylationOctamer Transcription Factor-1Octamer Transcription Factor-3

Identifiers

PMID19171782
PMCPMC2648538
OpenAlexW2161439327

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.