Evidence map›Paper›PMID 19171061›Full record

ArticleBMC systems biology2009

Elongation, proliferation & migration differentiate endothelial cell phenotypes and determine capillary sprouting.

Amina A Qutub, Aleksander S Popel

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Review
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  9. Article
  10. Mechanical regulation of the early stages of angiogenesis.Journal of the Royal Society, Interface · 2022
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Comparative analysis of continuum angiogenesis models.Journal of mathematical biology · 2021
    Article
  19. Review
  20. Sex differences in cancer mechanisms.Biology of sex differences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Amina A QutubDepartment of Biomedical Engineering, School of Medicine, Johns Hopkins University, 720 Rutland Avenue, Baltimore, MD 21205, USA. aminaq@jhu.edu
Aleksander S Popel
Johns Hopkins Medicine · USJohns Hopkins University · US

Funding

Quantitative Analysis of Angiogenesis in Skeletal MuscleR01HL079653 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI POPEL, ALEKSANDER S. · 2005 to 2009
$1.5M
Systems Biology of Angiogenesis: Molecules to therapyR33HL087351 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI POPEL, ALEKSANDER S. · 2006 to 2008
$1.3M
Modeling Intracellular Mechanisms of Hypoxic ResponseF32HL085016 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI QUTUB, AMINA ANN · 2006 to 2008
$145k
NHLBI NIH HHS 1F32HL085016-01NHLBI NIH HHS F32 HL085016NHLBI NIH HHS R01 HL079653NHLBI NIH HHS R01 HL79653NHLBI NIH HHS R33 HL087351
6 · The paper itself

Abstract

backgroundAngiogenesis, the growth of capillaries from preexisting blood vessels, has been extensively studied experimentally over the past thirty years. Molecular insights from these studies have lead to therapies for cancer, macular degeneration and ischemia. In parallel, mathematical models of angiogenesis have helped characterize a broader view of capillary network formation and have suggested new directions for experimental pursuit. We developed a computational model that bridges the gap between these two perspectives, and addresses a remaining question in angiogenic sprouting: how do the processes of endothelial cell elongation, migration and proliferation contribute to vessel formation?

resultsWe present a multiscale systems model that closely simulates the mechanisms underlying sprouting at the onset of angiogenesis. Designed by agent-based programming, the model uses logical rules to guide the behavior of individual endothelial cells and segments of cells. The activation, proliferation, and movement of these cells lead to capillary growth in three dimensions. By this means, a novel capillary network emerges out of combinatorially complex interactions of single cells. Rules and parameter ranges are based on literature data on endothelial cell behavior in vitro. The model is designed generally, and will subsequently be applied to represent species-specific, tissue-specific in vitro and in vivo conditions. Initial results predict tip cell activation, stalk cell development and sprout formation as a function of local vascular endothelial growth factor concentrations and the Delta-like 4 Notch ligand, as it might occur in a three-dimensional in vitro setting. Results demonstrate the differential effects of ligand concentrations, cell movement and proliferation on sprouting and directional persistence.

conclusionThis systems biology model offers a paradigm closely related to biological phenomena and highlights previously unexplored interactions of cell elongation, migration and proliferation as a function of ligand concentration, giving insight into key cellular mechanisms driving angiogenesis.

Indexed as

Cell MovementModels, BiologicalCapillariesCell ProliferationComputer SimulationEndothelial CellsHumansIntracellular Signaling Peptides and ProteinsNeovascularization, PhysiologicSystems BiologyVascular Endothelial Growth Factor AIntracellular Signaling Peptides and ProteinsVascular Endothelial Growth Factor A

Identifiers

PMID19171061
PMCPMC2672076
OpenAlexW2081399416

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.