Evidence map›Paper›PMID 19170759›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2009

Identification of a novel REV1-interacting motif necessary for DNA polymerase kappa function.

Eiji Ohashi, Tomo Hanafusa, Keijiro Kamei, Ihnyoung Song, Junya Tomida, Hiroshi Hashimoto, Cyrus Vaziri, Haruo Ohmori

Open access · bronzeAbstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. E3 ubiquitin ligase RNF2 protects polymerase ι from destabilization.Biochimica et biophysica acta. Molecular cell research · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Protein-Protein Interactions in Translesion Synthesis.Molecules (Basel, Switzerland) · 2021
    Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. The in vivo role of Rev1 in mutagenesis and carcinogenesis.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2020
    Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Eiji OhashiInstitute for Virus Research, Kyoto University, Japan.
Tomo Hanafusa
Keijiro Kamei
Ihnyoung Song
Junya Tomida
Hiroshi Hashimoto
Cyrus Vaziri
Haruo Ohmori
Kyoto University of Education · JPBoston University · USKyoto University · JPYokohama City University · JP

Funding

A Novel Carcinogen-Induced Cell Cycle CheckpointR01ES009558 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VAZIRI, CYRUS · 2002 to 2016
$4.8M
NOVEL CARCINOGEN INDUCED CELL CYCLE CHECKPOINTR29ES009558 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI VAZIRI, CYRUS · 1998 to 2001
$221k
NIEHS NIH HHS ES09558NIEHS NIH HHS R01 ES009558NIEHS NIH HHS R29 ES009558
6 · The paper itself

Abstract

When a replicative DNA polymerase (Pol) is stalled by damaged DNA, a "polymerase switch" recruits specialized translesion synthesis (TLS) DNA polymerase(s) to sites of damage. Mammalian cells have several TLS DNA polymerases, including the four Y-family enzymes (Poleta, Poliota, Polkappa and REV1) that share multiple primary sequence motifs, but show preferential bypass of different DNA lesions. REV1 interacts with Poleta, Poliota, and Polkappa and therefore appears to play a central role during TLS in vivo. Here we have investigated the molecular basis for interactions between REV1 and Polkappa. We have identified novel REV1-interacting regions (RIRs) present in Polkappa, Poliota and Poleta. Within the RIRs, the presence of two consecutive phenylalanines (FF) is essential for REV1-binding. The consensus sequence for REV1-binding is denoted by x-x-x-F-F-y-y-y-y (x, no specific residue and y, no specific residue but not proline). Our results identify structural requirements that are necessary for FF-flanking residues to confer interactions with REV1. A Polkappa mutant lacking REV1-binding activity did not complement the genotoxin-sensitivity of Polk-null mouse embryonic fibroblast cells, thereby demonstrating that the REV1-interaction is essential for Polkappa function in vivo.

Indexed as

Protein Interaction Domains and MotifsAmino Acid MotifsAmino Acid SequenceAnimalsCells, CulturedDNA-Directed DNA PolymeraseMiceMolecular Sequence DataNucleotidyltransferasesProtein BindingProtein Interaction MappingSequence Homology, Amino AcidSurface Plasmon ResonanceTwo-Hybrid System TechniquesYeastsY-Family DNA PolymerasesDNA-Directed DNA PolymeraseNucleotidyltransferasesPolk protein, mouseRev1 protein, mouseY-Family DNA Polymerases

Identifiers

PMID19170759
PMCPMC3103050
OpenAlexW2062739067

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.