ArticleJournal of chemical theory and computation2007
Quantum Calculations On Hydrogen Bonds In Certain Water Clusters Show Cooperative Effects.
Article in Journal of chemical theory and computation, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Hydrogen Bonding in Liquid Ammonia.The journal of physical chemistry letters · 2022Article
- Hydrogen bonding between hydrides of the upper-right part of the periodic table.Chemical physics · 2018Article
- Ions increase strength of hydrogen bond in water.Chemical physics letters · 2014Article
- Introducing Charge Hydration Asymmetry into the Generalized Born Model.Journal of chemical theory and computation · 2014Article
- Theoretical aspects of binary and ternary complexes of aziridine···ammonia ruled by hydrogen bond strength.Journal of molecular modeling · 2012Article
- Quantum mechanical calculations of charge effects on gating the KcsA channel.Biochimica et biophysica acta · 2007Article
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Authors and funding
2 authors.
Funding
Abstract
Water molecules in clefts and small clusters are in a significantly different environment than in bulk water. We have carried out ab initio calculations that demonstrate this in a series of clusters, showing that cooperative effects must be taken into account in the treatment of hydrogen bonds and water clusters in such bounded systems. Hydrogen bonds between water molecules in simulations are treated most frequently by using point charge water potentials, such as TIP3P or SPC, sometimes with a polarizable extension. These produce excellent results in bulk water, for which they are calibrated. Clefts are different from bulk; it is necessary to look at smaller systems, and investigate the effect of limited numbers of neighbors. We start with a study of isolated clusters of water with varying numbers of neighbors of a hydrogen bonded pair of water molecules. The cluster as a whole is in vacuum. The clusters are defined so as to provide the possible arrangements of nearest neighbors of a central hydrogen bonded pair of water molecules. We then scan the length and angles of the central hydrogen bond of the clusters, using density functional theory, for each possible arrangement of donor and acceptor hydrogen bonds on the central hydrogen bonding pair; the potential of interaction of two water molecules varies with the number of donor and of acceptor neighbors. This also involves changes in charge on the water molecules as a function of bond length, and changes in energy and length as a function of number of neighboring donor and acceptor molecules. Energy varies by approximately 6 k(B)T near room temperature from the highest to the lowest energy when bond length alone is varied, enough to seriously affect simulations.
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