Evidence map›Paper›PMID 19168892›Full record

ArticleInvestigative ophthalmology & visual science2009

Multiple genes on chromosome 7 regulate dopaminergic amacrine cell number in the mouse retina.

Irene E Whitney, Mary A Raven, Daniel C Ciobanu, Robert W Williams, Benjamin E Reese

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 40 citations in OpenAlex.

  1. Neurog2 regulates Isl1 to modulate horizontal cell number.Development (Cambridge, England) · 2023
    Article
  2. Article
  3. Interrelationships between Cellular Density, Mosaic Patterning, and Dendritic Coverage of VGluT3 Amacrine Cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Frontiers in neuroscience · 2018
    Article
  11. Article
  12. Genomic control of neuronal demographics in the retina.Progress in retinal and eye research · 2016
    Review
  13. Design principles and developmental mechanisms underlying retinal mosaics.Biological reviews of the Cambridge Philosophical Society · 2015
    Review
  14. Article
  15. Article
  16. Sox2 regulates cholinergic amacrine cell positioning and dendritic stratification in the retina.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  17. Article
  18. Pituitary tumor-transforming gene 1 regulates the patterning of retinal mosaics.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Irene E WhitneyNeuroscience Research Institute and Department of Psychology, University of California, Santa Barbara, California 93106-5060, USA.
Mary A Raven
Daniel C Ciobanu
Robert W Williams
Benjamin E Reese
University of California, Santa Barbara · USUniversity of Tennessee Health Science Center · US

Funding

Disperson Patterns of Retinal NeuroblastsR01EY011087 · NEI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 1997 to 2009
$2.2M
Two-Photon Microscopy for Biomedical ResearchS10RR022585 · NCRR · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2007 to 2007
$500k
NCRR NIH HHS S10 RR-022585NCRR NIH HHS S10 RR022585NEI NIH HHS R01 EY-011087NEI NIH HHS R01 EY011087
6 · The paper itself

Abstract

purposeThe size of neuronal populations is modulated by gene variants that influence cell production and survival, in turn influencing neuronal connectivity, function, and disease risk. The size of the dopaminergic amacrine (DA) cell population is a highly heritable trait exhibiting sixfold variation among inbred strains of mice and is used here to identify genes that modulate the number of DA cells.

methodsThe entire population was counted in retinal wholemounts from 37 genetically defined lines of mice, including six standard inbred strains, 25 recombinant inbred strains (AXB/BXA), reciprocal F1 hybrids, a chromosome (Chr) 7 consomic line, and three additional genetically modified lines.

resultsMuch of this variation was mapped to a broad locus on Chr 7 (Dopaminergic amacrine cell number control, Chr 7 [Dacnc7]). The Dacnc7 locus is flanked by two candidate genes known to modulate the number of other types of retinal neuron-the proapoptotic gene, Bax, and tyrosinase. The Tyr mutation was shown to modulate DA cell number modestly, though in the direction opposite that predicted. In contrast, Bax deficiency increased the population fourfold. Bax expression was significantly greater in the A/J than in the C57BL/6J strain, an effect that may be attributed to an SNP in a p53 consensus binding site known to modulate transcription. Finally, we note a strong candidate situated at the peak of the Dacnc7 locus, Lrrk1, a Parkinson's disease gene exhibiting missense mutations segregating within the AXB/BXA cross.

conclusionsMultiple polymorphic genes on Chr 7 modulate the size of the population of DA cells.

Indexed as

Amacrine CellsAnimalsCell CountChromosomesCrosses, GeneticMiceMice, Inbred AMice, Inbred C57BLMice, Inbred DBAMice, KnockoutMice, TransgenicMicroscopy, FluorescenceMonophenol MonooxygenasePolymerase Chain ReactionQuantitative Trait, HeritableQuantitative Trait LociMonophenol MonooxygenaseReceptors, DopamineTyrosine 3-Monooxygenase

Identifiers

PMID19168892
PMCPMC2672967
OpenAlexW2019742519

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.