Evidence map›Paper›PMID 19168612›Full record

ArticleJournal of bacteriology2009

Roles of Agrobacterium tumefaciens RirA in iron regulation, oxidative stress response, and virulence.

Patchara Ngok-Ngam, Nantaporn Ruangkiattikul, Aekkapol Mahavihakanont, Susan S Virgem, Rojana Sukchawalit, Skorn Mongkolsuk

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. mBio · 2021
    Article
  3. Article
  4. International journal of molecular sciences · 2019
    Article
  5. Review
  6. Review
  7. Sensing iron availabilityChemical science · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Fe-S proteins that regulate gene expression.Biochimica et biophysica acta · 2015
    Review
  14. Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Patchara Ngok-NgamChulabhorn Research Institute, Lak Si, Bangkok, Thailand.
Nantaporn Ruangkiattikul
Aekkapol Mahavihakanont
Susan S Virgem
Rojana Sukchawalit
Skorn Mongkolsuk
Mahidol University · THChulabhorn Graduate Institute · THChulabhorn Research Institute · THMassachusetts Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The analysis of genetics and physiological functions of Agrobacterium tumefaciens RirA (rhizobial iron regulator) has shown that it is a transcription regulator and a repressor of iron uptake systems. The rirA mutant strain (NTLrirA) overproduced siderophores and exhibited a highly constitutive expression of genes involved in iron uptake (fhuA, irp6A, and fbpA) compared to that of the wild-type strain (NTL4). The deregulation in the iron control of iron uptake in NTLrirA led to iron overload in the cell, which was supported by the observation that the NTLrirA mutant was more sensitive than wild-type NTL4 to an iron-activated antibiotic, streptonigrin. The NTLrirA mutant was more sensitive than the parental strain to oxidants, including hydrogen peroxide, organic hydroperoxide, and a superoxide generator, menadione. However, the addition of an iron chelator, 2,2'-dipyridyl, reversed the mutant hypersensitivity to H(2)O(2) and organic hydroperoxide, indicating the role of iron in peroxide toxicity. Meanwhile, the reduced level of superoxide dismutase (SodBIII) was partly responsible for the menadione-sensitive phenotype of the NTLrirA mutant. The NTLrirA mutant showed a defect in tumorigenesis on tobacco leaves, which likely resulted from the increased sensitivity of NTLrirA to oxidants and the decreased ability of NTLrirA to induce virulence genes (virB and virE). These data demonstrated that RirA is important for A. tumefaciens during plant-pathogen interactions.

Indexed as

Oxidative StressAgrobacterium tumefaciensBacterial ProteinsGene Expression Regulation, BacterialHydrogen PeroxideIronIron-Regulatory ProteinsNicotianaPlant TumorsSuperoxide DismutaseVirulenceBacterial ProteinsHydrogen PeroxideIronIron-Regulatory ProteinsSuperoxide Dismutase

Identifiers

PMID19168612
PMCPMC2655498
OpenAlexW2084975317

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.