Evidence map›Paper›PMID 19167443›Full record

ArticleHuman immunology2009

Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia.

Vesna Boraska, Eleftheria Zeggini, Christopher J Groves, Nigel W Rayner, Veselin Skrabić, Mahamadou Diakite, Kirk A Rockett, Dominic Kwiatkowski, Mark I McCarthy, Tatijana Zemunik

Open access · greenAbstract read
In one paragraph

Article in Human immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Leprosy as a genetic disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Review
  6. TNF-α and TNF-β Gene Polymorphism in Saudi Rheumatoid Arthritis Patients.Clinical medicine insights. Arthritis and musculoskeletal disorders · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Vesna BoraskaDepartment of Medical Biology, Medical School, University of Split, Split, Croatia. vboraska@mefst.hr
Eleftheria Zeggini
Christopher J Groves
Nigel W Rayner
Veselin Skrabić
Mahamadou Diakite
Kirk A Rockett
Dominic Kwiatkowski
Mark I McCarthy
Tatijana Zemunik
Centre for Human Genetics · GBUniversity of Oxford · GBUniversity of Split · HROxford Centre for Diabetes, Endocrinology and Metabolism · GB

Funding

Wellcome Trust 079557Wellcome Trust 082370Wellcome Trust 088885
6 · The paper itself

Abstract

Tumor necrosis factor (TNF) and lymphotoxin-alpha (LTA) are cytokines with a wide range of inflammatory and immunomodulatory activities. Type 1 diabetes is an autoimmune disease characterized by destruction of insulin-producing pancreatic beta cells. The aim of the present study was to evaluate the association of polymorphisms in the TNF/LTA gene region with susceptibility to type 1 diabetes. We investigated 11 TNF/LTA tag polymorphisms, designed to capture the majority of common variation in the region, in 160 trio families from South Croatia. We observed overtransmission of alleles from parents to affected child at five variants: (rs909253, allele C, p = 1.2x10(-4); rs1041981, allele A, p = 1.1x10(-4); rs1800629 (G-308A), allele A, p = 1.2x10(-4); rs361525 (G-238A), allele G, p = 8.2x10(-3) and rs3093668, allele G, p = 0.014). We also identified overtransmission of the rs1800629(G-308A)-rs361525(G-238A) A-G haplotype, p = 2.384x10(-5). The present study found an association of the TNF/LTA gene region with type 1 diabetes. A careful assessment of TNF/LTA variants adjusted for linkage disequilibrium with HLA loci is needed to further clarify the role of these genes in type 1 diabetes susceptibility in the population of South Croatia.

Indexed as

PedigreeAdolescentChildChild, PreschoolCroatiaDiabetes Mellitus, Type 1FamilyFemaleGenetic Predisposition to DiseaseGenotypeHumansLymphotoxin-alphaMalePolymorphism, Single NucleotideTumor Necrosis Factor-alphaLymphotoxin-alphaTumor Necrosis Factor-alpha

Identifiers

PMID19167443
PMCPMC2709221
OpenAlexW1979713976

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.