ArticleBMC bioinformatics2009
Genome Projector: zoomable genome map with multiple views.
Article in BMC bioinformatics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- FluentDNA: Nucleotide Visualization of Whole Genomes, Annotations, and Alignments.Frontiers in genetics · 2020Article
- DNAvisualization.org: a serverless web tool for DNA sequence visualization.Nucleic acids research · 2019Article
- Article
- Lung cancer-a fractal viewpoint.Nature reviews. Clinical oncology · 2015Review
- Mimoza: web-based semantic zooming and navigation in metabolic networks.BMC systems biology · 2015Article
- Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.GigaScience · 2015Review
- Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.Bioinformatics (Oxford, England) · 2014Article
- Unraveling genomic variation from next generation sequencing data.BioData mining · 2013Article
- Genome Maps, a new generation genome browser.Nucleic acids research · 2013Article
- What Google Maps can do for biomedical data dissemination: examples and a design study.BMC research notes · 2013Article
- CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis.Bioinformatics (Oxford, England) · 2012Article
- ABrowse--a customizable next-generation genome browser framework.BMC bioinformatics · 2012Article
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.BMC genomics · 2011Article
- The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.Journal of biomedical semantics · 2011Article
- G-language genome analysis environment with REST and SOAP web service interfaces.Nucleic acids research · 2010Article
- A PubMed-wide associational study of infectious diseases.PloS one · 2010Article
- Visualizing genomes: techniques and challenges.Nature methods · 2010Review
- Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.PloS one · 2009Article
- GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes.Standards in genomic sciences · 2009Article
- A web server for interactive and zoomable Chaos Game Representation images.Source code for biology and medicine · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMolecular biology data exist on diverse scales, from the level of molecules to -omics. At the same time, the data at each scale can be categorised into multiple layers, such as the genome, transcriptome, proteome, metabolome, and biochemical pathways. Due to the highly multi-layer and multi-dimensional nature of biological information, software interfaces for database browsing should provide an intuitive interface that allows for rapid migration across different views and scales. The Zoomable User Interface (ZUI) and tabbed browsing have proven successful for this purpose in other areas, especially to navigate the vast information in the World Wide Web.
resultsThis paper presents Genome Projector, a Web-based gateway for genomics information with a zoomable user interface using Google Maps API, equipped with four seamlessly accessible and searchable views: a circular genome map, a traditional genome map, a biochemical pathways map, and a DNA walk map. The Web application for 320 bacterial genomes is available at http://www.g-language.org/GenomeProjector/. All data and software including the source code, documentations, and development API are freely available under the GNU General Public License. Zoomable maps can be easily created from any image file using the development API, and an online data mapping service for Genome Projector is also available at our Web site.
conclusionGenome Projector is an intuitive Web application for browsing genomics information, implemented with a zoomable user interface and tabbed browsing utilising Google Maps API and Asynchronous JavaScript and XML (AJAX) technology.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.