Evidence map›Paper›PMID 19165922›Full record

ArticleNature genetics2008

Evolutionary toggling of the MAPT 17q21.31 inversion region.

Michael C Zody, Zhaoshi Jiang, Hon-Chung Fung, Francesca Antonacci, LaDeana W Hillier, Maria Francesca Cardone, Tina A Graves, Jeffrey M Kidd, Ze Cheng, Amr Abouelleil and 10 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 1 synthesis or guideline pooled it, 241 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. ModelingbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Complete sequencing of ape genomes.bioRxiv : the preprint server for biology · 2024
    Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 5 countries.

Michael C ZodyBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.
Zhaoshi Jiang
Hon-Chung Fung
Francesca Antonacci
LaDeana W Hillier
Maria Francesca Cardone
Tina A Graves
Jeffrey M Kidd
Ze Cheng
Amr Abouelleil
Lin Chen
John Wallis
Jarret Glasscock
Richard K Wilson
Amy Denise Reily
Jaime Duckworth
Mario Ventura
John Hardy
Wesley C Warren
Evan E Eichler
Washington University in St. Louis · USUniversity of Washington · USBroad Institute · USHoward Hughes Medical Institute · USUniversity of Bari Aldo Moro · ITChang Gung University · TWNational Institutes of Health · USSeattle University · USUniversity College London · GB

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
MECHANISM &INSTABILITY OF PERICENTROMERIC DUPLICATIONSR01GM058815 · NIGMS · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 1999 to 2010
$2.9M
Assessment of Candidate Loci in Parkinson's diseaseZ01AG000957 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW B · 2003 to 2008
$1.2M
Characterization of Normal Genomic VariabilityZ01AG000932 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2008 to 2008
$658k
Howard Hughes Medical InstituteIntramural NIH HHS Z01 AG000957Medical Research Council G0701075NHGRI NIH HHS HG002385NHGRI NIH HHS R01 HG002385NIGMS NIH HHS GM058815NIGMS NIH HHS R01 GM058815
6 · The paper itself

Abstract

Using comparative sequencing approaches, we investigated the evolutionary history of the European-enriched 17q21.31 MAPT inversion polymorphism. We present a detailed, BAC-based sequence assembly of the inverted human H2 haplotype and compare it to the sequence structure and genetic variation of the corresponding 1.5-Mb region for the noninverted H1 human haplotype and that of chimpanzee and orangutan. We found that inversion of the MAPT region is similarly polymorphic in other great ape species, and we present evidence that the inversions occurred independently in chimpanzees and humans. In humans, the inversion breakpoints correspond to core duplications with the LRRC37 gene family. Our analysis favors the H2 configuration and sequence haplotype as the likely great ape and human ancestral state, with inversion recurrences during primate evolution. We show that the H2 architecture has evolved more extensive sequence homology, perhaps explaining its tendency to undergo microdeletion associated with mental retardation in European populations.

Indexed as

Chromosome InversionChromosomes, Human, Pair 17Evolution, MolecularPolymorphism, GeneticAnimalsBase SequenceGene DuplicationHumansModels, BiologicalMolecular Sequence DataPan troglodytesPhylogenyPongo pygmaeusSequence Analysis, DNAtau ProteinsMAPT protein, humantau Proteins

Identifiers

PMID19165922
PMCPMC2684794
OpenAlexW2020079665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.