Evidence map›Paper›PMID 19165724›Full record

ArticleProtein science : a publication of the Protein Society2009

Re-engineering a beta-lactamase using prototype peptides from a library of local structural motifs.

Valeria A Risso, María E Primo, Mario R Ermácora

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Fifty years of biophysics in Argentina.Biophysical reviews · 2023
    Article
  2. Equilibrium partially folded states of B. licheniformisEuropean biophysics journal : EBJ · 2019
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Valeria A RissoDepartamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Bernal, Buenos Aires, Argentina.
María E Primo
Mario R Ermácora

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B. licheniformis exo-small beta-lactamase (ESBL) has a complex architecture with twelve alpha helices and a five-stranded beta sheet. We replaced, separately or simultaneously, three of the ESBL alpha helices with prototype amphiphatic helices from a catalog of secondary structure elements. Although the substitutes bear no sequence similarity to the originals and pertain to unrelated protein families, all the engineered ESBL variants were found able to fold in native like structures with in vitro and in vivo enzymic activity. The triple substituted variant resembles a primitive protein, with folding defects such as a strong tendency to oligomerization and very low stability; however it mimics a non homologous recombinant abandoning the family sequence space while preserving fold. The results test protein folding and evolution theories.

Indexed as

AlgorithmsAmino Acid SequenceBacillusbeta-LactamasesCircular DichroismEscherichia coliFluorescent DyesHot TemperatureKineticsLeast-Squares AnalysisModels, MolecularMolecular Sequence DataPeptide LibraryProtein ConformationProtein EngineeringProtein Foldingbeta-LactamasesFluorescent DyesPeptide LibraryRecombinant ProteinsUrea

Identifiers

PMID19165724
PMCPMC2708064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.