Evidence map›Paper›PMID 19158959›Full record

ArticleMolecular vision2009

Sequence alterations in RX in patients with microphthalmia, anophthalmia, and coloboma.

Nikolas J S London, Patricia Kessler, Bryan Williams, Gayle J Pauer, Stephanie A Hagstrom, Elias I Traboulsi

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. The rax homeobox gene is mutated in the eyeless axolotl, Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  4. Review
  5. Article
  6. Article
  7. Conserved genetic pathways associated with microphthalmia, anophthalmia, and coloboma.Birth defects research. Part C, Embryo today : reviews · 2015
    Review
  8. Article
  9. Article
  10. Article
  11. Eye development genes and known syndromes.Molecular genetics and metabolism · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Nikolas J S LondonCase Western Reserve University School of Medicine, Cleveland, OH, USA.
Patricia Kessler
Bryan Williams
Gayle J Pauer
Stephanie A Hagstrom
Elias I Traboulsi
Cleveland Clinic · USCase Western Reserve University · USHudson Institute · US

Funding

The Role of TULP1 in Photoreceptor CellsR01EY016072 · NEI · CLEVELAND CLINIC LERNER COM-CWRU · PI HAGSTROM, STEPHANIE A · 2006 to 2015
$3.1M
NEI NIH HHS EY16072NEI NIH HHS R01 EY016072
6 · The paper itself

Abstract

purposeMicrophthalmia, anophthalmia, and coloboma are ocular malformations with a significant genetic component. Rx is a homeobox gene expressed early in the developing retina and is important in retinal cell fate specification as well as stem cell proliferation. We screened a group of 24 patients with microphthalmia, coloboma, and/or anophthalmia for RX mutations.

methodsWe used standard PCR and automated sequencing techniques to amplify and sequence each of the three RX exons. Patients' charts were reviewed for clinical information. The pathologic impact of the identified sequence variant was analyzed by computational methods using PolyPhen and PMut algorithms.

resultsIn addition to the polymorphisms we identified a single patient with coloboma having a heterozygous nucleotide change (g.197G>C) in the first exon that results in a missense mutation of arginine to threonine at amino acid position 66 (R66T). In silico analysis predicted R66T to be a deleterious mutation.

conclusionsSequence variations in RX are uncommon in patients with congenital ocular malformations, but may play a role in disease pathogenesis. We observed a missense mutation in RX in a patient with a small, typical chorioretinal coloboma, and postulate that the mutation is responsible for the patient's phenotype.

Indexed as

Amino Acid SubstitutionAnophthalmosBase SequenceColobomaDNA Mutational AnalysisEye ProteinsFundus OculiHeterozygoteHomeodomain ProteinsHumansMicrophthalmosMolecular Sequence DataTranscription FactorsEye ProteinsHomeodomain ProteinsRAX protein, humanTranscription Factors

Identifiers

PMID19158959
PMCPMC2628315
OpenAlexW2096569762

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.