Evidence map›Paper›PMID 19158162›Full record

ArticleBioinformatics (Oxford, England)2009

Disperse--a software system for design of selector probes for exon resequencing applications.

J Stenberg, M Zhang, H Ji

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

J StenbergDepartment of Medicine, Division of Oncology, Stanford University School of Medicine, Clark Center W300, 318 Campus Drive, Stanford, CA 94305-5440, USA.
M Zhang
H Ji

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI HOWE, ROGER THOMAS, JI, HANLEE P · 1990 to 2016
$120.9M
Genetics/microsatellite instability in tumor suppressorsK08CA096879 · NCI · STANFORD UNIVERSITY · PI JI, HANLEE · 2002 to 2007
$614k
Development of Selectors for Cancer Mutation AnalysisR21CA128485 · NCI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2007 to 2008
$434k
NCI NIH HHS 5K08CA96879-6NCI NIH HHS 5R21CA128485NCI NIH HHS K08 CA096879NCI NIH HHS R21 CA128485NHGRI NIH HHS 2P01HG000205NHGRI NIH HHS P01 HG000205
6 · The paper itself

Abstract

summarySelector probes enable the amplification of many selected regions of the genome in multiplex. Disperse is a software pipeline that automates the procedure of designing selector probes for exon resequencing applications. AVAILABILITY: Software and documentation is available at http://bioinformatics.org/disperse

Indexed as

SoftwareComputational BiologyExonsGenomeOligonucleotide ProbesSequence Analysis, DNAOligonucleotide Probes

Identifiers

PMID19158162
PMCPMC2647824

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.