Evidence map›Paper›PMID 19156734›Full record

ArticleBiotechnology journal2009

Production of random DNA oligomers for scalable DNA computing.

Sixue S L Wang, John J X Johnson, Bradley S T Hughes, Dundar A O Karabay, Karson D W Bader, Allen Austin, Alan Austin, Aisha Habib, Husnia Hatef, Megha Joshi and 2 more

Erratum issuedAbstract read
In one paragraph

Article in Biotechnology journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

  • Erratum issued
    Austin, Alan [corrected to Austin, Allen]
5 · Who and what money

Authors and funding

12 authors.

Sixue S L WangUniversity of California, Riverside, CA 92521, USA.
John J X Johnson
Bradley S T Hughes
Dundar A O Karabay
Karson D W Bader
Allen Austin
Alan Austin
Aisha Habib
Husnia Hatef
Megha Joshi
Lawrence Nguyen
Allen P Mills

Funding

UC Riverside MARC U* Star Undergraduate Research ProgramT34GM062756 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MARTINEZ, ERNEST · 2001 to 2022
$8.7M
NIGMS NIH HHS GM062756NIGMS NIH HHS T34 GM062756
6 · The paper itself

Abstract

While remarkably complex networks of connected DNA molecules can form from a relatively small number of distinct oligomer strands, a large computational space created by DNA reactions would ultimately require the use of many distinct DNA strands. The automatic synthesis of this many distinct strands is economically prohibitive. We present here a new approach to producing distinct DNA oligomers based on the polymerase chain reaction (PCR) amplification of a few random template sequences. As an example, we designed a DNA template sequence consisting of a 50-mer random DNA segment flanked by two 20-mer invariant primer sequences. Amplification of a dilute sample containing about 30 different template molecules allows us to obtain around 10(11) copies of these molecules and their complements. We demonstrate the use of these amplicons to implement some of the vector operations that will be required in a DNA implementation of an analog neural network.

Indexed as

Computers, MolecularDNA PrimersDNA, Single-StrandedOligodeoxyribonucleotidesDNAElectrophoresis, Polyacrylamide GelGenetic VectorsPolymerase Chain ReactionSequence Analysis, DNADNADNA PrimersDNA, Single-StrandedOligodeoxyribonucleotides

Identifiers

PMID19156734
PMCPMC4991938

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.