Evidence map›Paper›PMID 19156454›Full record

ArticleFunctional & integrative genomics2009

Matching the proteome to the genome: the microbody of penicillin-producing Penicillium chrysogenum cells.

Jan A K W Kiel, Marco A van den Berg, Fabrizia Fusetti, Bert Poolman, Roel A L Bovenberg, Marten Veenhuis, Ida J van der Klei

Open access · hybridAbstract read
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In one paragraph

Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Subcellular localization of fungal specialized metabolites.Fungal biology and biotechnology · 2022
    Review
  7. Microorganisms · 2022
    Review
  8. Translating theFrontiers in cell and developmental biology · 2022
    Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Dual targeting of peroxisomal proteins.Frontiers in physiology · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jan A K W KielMolecular Cell Biology, Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, AA Haren, The Netherlands. J.A.K.W.Kiel@RUG.nl
Marco A van den Berg
Fabrizia Fusetti
Bert Poolman
Roel A L Bovenberg
Marten Veenhuis
Ida J van der Klei
University of Groningen · NLDSM (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the filamentous fungus Penicillium chrysogenum, microbodies are essential for penicillin biosynthesis. To better understand the role of these organelles in antibiotics production, we determined the matrix enzyme contents of P. chrysogenum microbodies. Using a novel in silico approach, we first obtained a catalogue of 200 P. chrysogenum proteins with putative microbody targeting signals (PTSs). This included two orthologs of proteins involved in cephalosporin biosynthesis, which we demonstrate to be bona fide microbody matrix constituents. Subsequently, we performed a proteomics based inventory of P. chrysogenum microbody matrix proteins using nano-LC-MS/MS analysis. We identified 89 microbody proteins, 79 with a PTS, including the two known microbody-borne penicillin biosynthesis enzymes, isopenicillin N:acyl CoA acyltransferase and phenylacetyl-CoA ligase. Comparative analysis revealed that 69 out of 79 PTS proteins identified experimentally were in the reference list. A prominent microbody protein was identified as a novel fumarate reductase-cytochrome b5 fusion protein, which contains an internal PTS2 between the two functional domains. We show that this protein indeed localizes to P. chrysogenum microbodies.

Indexed as

Amino Acid SequenceBase SequenceDNA, FungalDNA PrimersFungal ProteinsGenome, FungalMicrobodiesMicroscopy, Electron, TransmissionMolecular Sequence DataPenicillinsPenicillium chrysogenumPlasmidsProtein Sorting SignalsProteomeProteomicsRecombinant ProteinsDNA, FungalDNA PrimersFungal ProteinsPenicillinsProtein Sorting SignalsProteomeRecombinant Proteins

Identifiers

PMID19156454
OpenAlexW2118932911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.