Evidence map›Paper›PMID 19155325›Full record

ArticleRNA (New York, N.Y.)2009

Knockdown of SLBP results in nuclear retention of histone mRNA.

Kelly D Sullivan, Thomas E Mullen, William F Marzluff, Eric J Wagner

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Polyadenylation of canonical histone H3.1 in carcinogenesis.Advances in pharmacology (San Diego, Calif.) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Stem-loop binding protein and metal carcinogenesis.Seminars in cancer biology · 2021
    Review
  14. Replication-dependent histone biosynthesis is coupled to cell-cycle commitment.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kelly D SullivanDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Thomas E Mullen
William F Marzluff
Eric J Wagner
University of North Carolina at Chapel Hill · US

Funding

CONTROL OF HISTONE MRNA SYNTHESISR01GM029832 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOMINSKI, ZBIGNIEW, MARZLUFF, WILLIAM F. · 1985 to 2022
$9.0M
CELL &MOLECULAR BIOLOGY TRAINING PROGRAMT32GM008581 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COX, ADRIENNE D · 1996 to 2008
$1.3M
Characterizing Novel Components Involved in 3' End Processing of Histone pre-mRNAR00GM080447 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WAGNER, ERIC J · 2008 to 2010
$745k
Elucidation of the Histone 3' End Formation MechanismF32GM070101 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WAGNER, ERIC J · 2004 to 2006
$142k
Characterizing Novel Components Involved in 3' End Processing of Histone pre-mRNAK99GM080447 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WAGNER, ERIC J · 2007 to 2007
$89k
NIGMS NIH HHS F32 GM070101NIGMS NIH HHS F32GM070101NIGMS NIH HHS GM29832NIGMS NIH HHS K99 GM080447NIGMS NIH HHS K99GM080447NIGMS NIH HHS R00 GM080447NIGMS NIH HHS R01 GM029832NIGMS NIH HHS T32 GM008581NIGMS NIH HHS T32GM008581
6 · The paper itself

Abstract

Histone mRNAs are the only eukaryotic cellular mRNAs that are not polyadenylated. Synthesis of mature histone mRNA requires only a single processing reaction: an endonucleolytic cleavage between a conserved stem-loop and a purine-rich downstream element to form the 3' end. The stem-loop binding protein (SLBP) is required for processing, and following processing, histone mRNA is transported to the cytoplasm, where SLBP participates in translation of the histone mRNA and is also involved in regulation of histone mRNA degradation. Here we present an analysis of histone mRNA metabolism in cells with highly reduced levels of SLBP using RNA interference. Knocking down SLBP in U2OS cells results in a reduction in the rate of cell growth and an accumulation of cells in S-phase. Surprisingly, there is only a modest (twofold) decrease in histone mRNA levels. Much of histone mRNA in the SLBP knockdown cells is properly processed but is retained in the nucleus. The processed histone mRNA in SLBP knockdown cells is not rapidly degraded when DNA replication is inhibited. These results suggest a previously undescribed role for SLBP in histone mRNA export.

Indexed as

Active Transport, Cell NucleusBase SequenceCell CycleCell NucleusGene Knockdown TechniquesHistonesHumansMolecular Sequence DatamRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRNA, MessengerHistonesmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRNA, MessengerSLBP protein, human

Identifiers

PMID19155325
PMCPMC2657014
OpenAlexW2111005893

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.