Evidence map›Paper›PMID 19155275›Full record

ArticleNucleic acids research2009

Real-time single-molecule observation of rolling-circle DNA replication.

Nathan A Tanner, Joseph J Loparo, Samir M Hamdan, Slobodan Jergic, Nicholas E Dixon, Antoine M van Oijen

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1,278 citations in OpenAlex.

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  12. Using conditional independence tests to elucidate causal links in cell cycle regulation inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. DNA Manipulation and Single-Molecule Imaging.Molecules (Basel, Switzerland) · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nathan A TannerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Joseph J Loparo
Samir M Hamdan
Slobodan Jergic
Nicholas E Dixon
Antoine M van Oijen
University of Wollongong · AUHarvard University · US

Funding

Single-molecule enzymology of the replisomeR01GM077248 · NIGMS · HARVARD MEDICAL SCHOOL · PI VAN OIJEN, ANTOINE M · 2007 to 2011
$1.2M
NIGMS NIH HHS GM077248NIGMS NIH HHS R01 GM077248
6 · The paper itself

Abstract

We present a simple technique for visualizing replication of individual DNA molecules in real time. By attaching a rolling-circle substrate to a TIRF microscope-mounted flow chamber, we are able to monitor the progression of single-DNA synthesis events and accurately measure rates and processivities of single T7 and Escherichia coli replisomes as they replicate DNA. This method allows for rapid and precise characterization of the kinetics of DNA synthesis and the effects of replication inhibitors.

Indexed as

DNA ReplicationBacteriophage T7Deoxyguanine NucleotidesDideoxynucleotidesDNA, BacterialDNA-Directed DNA PolymeraseDNA, ViralEscherichia coliFluorescent DyesKineticsMicroscopy, FluorescenceMultienzyme ComplexesOrganic ChemicalsReplisomes2',3'-dideoxyguanosine 5'-triphosphateDeoxyguanine NucleotidesDideoxynucleotidesDNA, BacterialDNA-Directed DNA PolymeraseDNA, ViralFluorescent DyesMultienzyme ComplexesOrganic ChemicalsReplisomesSYTOX Orange dye

Identifiers

PMID19155275
PMCPMC2651787
OpenAlexW2108539496

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.