Evidence map›Paper›PMID 19153786›Full record

ArticleFunctional & integrative genomics2009

Bacterial intein-like domains of predatory bacteria: a new domain type characterized in Bdellovibrio bacteriovorus.

Mally Dori-Bachash, Bareket Dassa, Ofer Peleg, Silvia A Pineiro, Edouard Jurkevitch, Shmuel Pietrokovski

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Bacterial genome instability.Microbiology and molecular biology reviews : MMBR · 2014
    Review
  3. The role of reticulate evolution in creating innovation and complexity.International journal of evolutionary biology · 2012
    Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Mally Dori-BachashDepartment of Plant Pathology and Microbiology, Faculty of Agriculture, Food and Environment, The Hebrew University, Rehovot, Israel.
Bareket Dassa
Ofer Peleg
Silvia A Pineiro
Edouard Jurkevitch
Shmuel Pietrokovski
Weizmann Institute of Science · ILHebrew University of Jerusalem · ILUniversity of Maryland, College Park · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report a new family of bacterial intein-like domains (BILs) identified in ten proteins of four diverse predatory bacteria. BILs belong to the HINT (Hedgehog/Intein) superfamily of domains that post-translationally self-process their protein molecules by protein splicing and self-cleavage. The new, C-type, BILs appear with other domains, including putative predator-specific domain 1 (PPS-1), a new domain typically appearing immediately upstream of C-type BILs. The Bd2400 protein of the obligate predator Bdellovibrio bacteriovorus includes a C-type BIL and a PPS-1 domains at its C-terminal part, and a signal peptide and two polycystic kidney disease domains at its N-terminal part. We demonstrate the in vivo transcription, translation, secretion, and processing of the B. bacteriovorus protein, and the in vitro autocatalytic N-terminal cleavage activity of its C-type BIL. Interestingly, whereas the Bd2400 gene is constitutively expressed, its protein product is differentially processed throughout the dimorphic life cycle of the B. bacteriovorus predator. The modular structure of the protein, its localization, and complex processing suggest that it may be involved in the interaction between the predator and its prey.

Indexed as

Amino Acid SequenceBacterial ProteinsBdellovibrioGene Expression Regulation, BacterialGene Expression Regulation, DevelopmentalGenes, BacterialHost-Pathogen InteractionsInteinsMolecular Sequence DataProtein Processing, Post-TranslationalProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidBacterial ProteinsRecombinant Proteins

Identifiers

PMID19153786
OpenAlexW2092115924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.