Evidence map›Paper›PMID 19153740›Full record

ArticlePlant cell reports2009

The promoter of the Arabidopsis thaliana BAN gene is active in proanthocyanidin-accumulating cells of the Brassica napus seed coat.

Nathalie Nesi, Marie-Odile Lucas, Bathilde Auger, Cécile Baron, Alain Lécureuil, Philippe Guerche, Jocelyne Kronenberger, Loïc Lepiniec, Isabelle Debeaujon, Michel Renard

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Article in Plant cell reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Nathalie NesiUMR118 INRA-Agrocampus Ouest-Université de Rennes1 Amélioration des Plantes et Biotechnologies Végétales, Le Rheu Cedex, France. nathalie.nesi@rennes.inra.fr
Marie-Odile Lucas
Bathilde Auger
Cécile Baron
Alain Lécureuil
Philippe Guerche
Jocelyne Kronenberger
Loïc Lepiniec
Isabelle Debeaujon
Michel Renard
AgroParisTech · FRInstitut Agro Rennes-Angers · FRInstitut Jean-Pierre Bourgin · FRUniversité de Rennes · FRDépartement Biologie et Amélioration des Plantes · FRInstitut National de la Recherche Agronomique · MA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As part of an ongoing research program dedicated to the understanding of proanthocyanidin (PA) accumulation in Brassica napus seed coat, transgenic rapeseed plants carrying a 2.3-kb fragment of the Arabidopsis thaliana BAN promoter (ProAtBAN) fused to the uidA reporter gene (GUS) were generated. Analysis of these plants revealed that ProAtBAN was activated in B. napus seed coat, following a spatio-temporal pattern that was very similar to the PA deposition profile in rapeseed and also to the one previously described in Arabidopsis. ProAtBAN activity occurred as soon as the early stages of embryogenesis and was restricted to the cells where PAs were shown to accumulate. Therefore, the Arabidopsis BAN promoter can be used to trigger gene expression in B. napus seed coat for both genetic engineering and functional validation of candidate genes. In addition, these data strongly suggest that the transcriptional regulatory network of the BAN gene is conserved between Arabidopsis and rapeseed. This is consistent with the fact that similarity searches of the public rapeseed sequence databases allowed recovering the rapeseed homologs for several BAN regulators, namely TT1, TT2, TT8, TT16 and TTG1, which have been previously described in Arabidopsis.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceArabidopsisArabidopsis ProteinsBrassica napusDNA, PlantGene Expression Regulation, PlantMolecular Sequence DataNADH, NADPH OxidoreductasesPlants, Genetically ModifiedProanthocyanidinsSeedsSequence AlignmentSequence Analysis, DNAArabidopsis ProteinsBANYULS protein, ArabidopsisDNA, PlantNADH, NADPH OxidoreductasesproanthocyanidinProanthocyanidins

Identifiers

PMID19153740
OpenAlexW1976701554

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.