Evidence map›Paper›PMID 19153611›Full record

ArticleThe EMBO journal2009

Differential targeting of Tetrahymena ORC to ribosomal DNA and non-rDNA replication origins.

Taraka R Donti, Shibani Datta, Pamela Y Sandoval, Geoffrey M Kapler

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptome analysis of the binucleate ciliateMolecular biology of the cell · 2023
    Article
  4. Article
  5. Origins of DNA replication.PLoS genetics · 2019
    Review
  6. Review
  7. Article
  8. Genome Duplication: The Heartbeat of Developing Organisms.Current topics in developmental biology · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Taraka R DontiDepartment of Molecular and Cellular Medicine, Texas A&M Health Science Center, College Station, TX, USA.
Shibani Datta
Pamela Y Sandoval
Geoffrey M Kapler
Texas A&M Health Science Center · USTexas A&M Health Science Center · USTexas A&M University · US

Funding

Replication and Amplification of Tetrahymena rDNAR01GM053572 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI KAPLER, GEOFFREY M. · 2002 to 2010
$2.1M
NIGMS NIH HHS 5R01GM053572NIGMS NIH HHS R01 GM053572
6 · The paper itself

Abstract

The Tetrahymena thermophila origin recognition complex (ORC) contains an integral RNA subunit, 26T RNA, which confers specificity to the amplified ribosomal DNA (rDNA) origin by base pairing with an essential cis-acting replication determinant--the type I element. Using a plasmid maintenance assay, we identified a 6.7 kb non-rDNA fragment containing two closely associated replicators, ARS1-A (0.8 kb) and ARS1-B (1.2 kb). Both replicators lack type I elements and hence complementarity to 26T RNA, suggesting that ORC is recruited to these sites by an RNA-independent mechanism. Consistent with this prediction, although ORC associated exclusively with origin sequences in the 21 kb rDNA minichromosome, the interaction between ORC and the non-rDNA ARS1 chromosome changed across the cell cycle. In G(2) phase, ORC bound to all tested sequences in a 60 kb interval spanning ARS1-A/B. Remarkably, ORC and Mcm6 associated with just the ARS1-A replicator in G(1) phase when pre-replicative complexes assemble. We propose that ORC is stochastically deposited onto newly replicated non-rDNA chromosomes and subsequently targeted to preferred initiation sites prior to the next S phase.

Indexed as

Replication OriginAnimalsBase SequenceCell CycleChromosomesComputational BiologyDNA ReplicationDNA, RibosomalModels, BiologicalMolecular Sequence DataMultiprotein ComplexesOrigin Recognition ComplexProtein BindingSequence DeletionTetrahymena thermophilaDNA, RibosomalMultiprotein ComplexesOrigin Recognition Complex

Identifiers

PMID19153611
PMCPMC2637336
OpenAlexW2134774237

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.