Evidence map›Paper›PMID 19153232›Full record

ArticleJournal of virology2009

Severe acute respiratory syndrome coronavirus nsp9 dimerization is essential for efficient viral growth.

Zachary J Miknis, Eric F Donaldson, Timothy C Umland, Ryan A Rimmer, Ralph S Baric, L Wayne Schultz

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

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  16. Article
  17. Overview of SARS-CoV-2 genome-encoded proteins.Science China. Life sciences · 2022
    Review
  18. Article
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zachary J MiknisDepartment of Structural Biology, State University of New York at Buffalo, Buffalo, New York 14203, USA.
Eric F Donaldson
Timothy C Umland
Ryan A Rimmer
Ralph S Baric
L Wayne Schultz

Funding

STUDIES INTO THE MECHANISMS FOR MHV REPLICATIONR01AI023946 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S · 1986 to 2007
$2.3M
SARS Reverse GeneticsR01AI059136 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S · 2004 to 2008
$1.4M
STRUCTURAL STUDIES OF SARS AND MHV REPLICASE PROTEINSR21AI061057 · NIAID · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI SCHULTZ, L WAYNE · 2004 to 2005
$640k
NIAID NIH HHS AI059136NIAID NIH HHS AI23946NIAID NIH HHS R01 AI023946NIAID NIH HHS R01 AI059136NIAID NIH HHS R21 AI061057NIAID NIH HHS R21AI061057
6 · The paper itself

Abstract

The severe acute respiratory syndrome coronavirus (SARS-CoV) devotes a significant portion of its genome to producing nonstructural proteins required for viral replication. SARS-CoV nonstructural protein 9 (nsp9) was identified as an essential protein with RNA/DNA-binding activity, and yet its biological function within the replication complex remains unknown. Nsp9 forms a dimer through the interaction of parallel alpha-helices containing the protein-protein interaction motif GXXXG. In order to study the role of the nsp9 dimer in viral reproduction, residues G100 and G104 at the helix interface were targeted for mutation. Multi-angle light scattering measurements indicated that G100E, G104E, and G104V mutants are monomeric in solution, thereby disrupting the dimer. However, electrophoretic mobility assays revealed that the mutants bound RNA with similar affinity. Further experiments using fluorescence anisotropy showed a 10-fold reduction in RNA binding in the G100E and G104E mutants, whereas the G104V mutant had only a 4-fold reduction. The structure of G104E nsp9 was determined to 2.6-A resolution, revealing significant changes at the dimer interface. The nsp9 mutations were introduced into SARS-CoV using a reverse genetics approach, and the G100E and G104E mutations were found to be lethal to the virus. The G104V mutant produced highly debilitated virus and eventually reverted back to the wild-type protein sequence through a codon transversion. Together, these data indicate that dimerization of SARS-CoV nsp9 at the GXXXG motif is not critical for RNA binding but is necessary for viral replication.

Indexed as

DimerizationVirus ReplicationAmino Acid SubstitutionBinding SitesCircular DichroismCrystallography, X-RayElectrophoretic Mobility Shift AssayMagnetic Resonance SpectroscopyMicrobial ViabilityModels, MolecularMutagenesis, Site-DirectedMutant ProteinsProtein BindingProtein ConformationProtein Structure, TertiaryRNA-Binding ProteinsMutant Proteinsnsp9 protein, SARS virusRNA-Binding ProteinsRNA, ViralViral Proteins

Identifiers

PMID19153232
PMCPMC2655571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.